Gordonia sp. YC-JH1: CXX93_13780
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Entry
CXX93_13780 CDS
T05256
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
goc
Gordonia sp. YC-JH1
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goc03019
]
CXX93_13780 (hrpA)
Enzymes [BR:
goc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CXX93_13780 (hrpA)
Messenger RNA biogenesis [BR:
goc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CXX93_13780 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
ABC_tran
AAA_30
AAA_23
NACHT
T2SSE
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AUH69210
LinkDB
All DBs
Position
2961414..2965118
Genome browser
AA seq
1234 aa
AA seq
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MPSAIPSPDLSALTISYPPELPVSACRDEIAEAVSAHQVVVIAGETGSGKTTQLPKICLE
LGRTSIGHTQPRRIAATSVARRIADELGTEIGGTVGYQVRFSDKVGKDTRIKVMTDGILL
REIGRDPRLSGYDTIIIDEAHERSLNIDFLLGYLKQLLPTRPDLKLIITSATIEPDRFAR
HFATTADTVPILEVSGRTYPVEIRYRPRESDDSDHDDLDQIAAIDAAVGELWSHAPGDIL
VFLPTERDIRDTADALRRRSAAEIVPLFARLSVGEQQRVFAPSNGRRIVLATNVAETSLT
VPGIRYVIDAGTARISRYSTRTKVTRLPVERVSQASARQRAGRCGRVAPGICIRLYSEDD
FDARPEYTDPEILRSNLAAVILSMLSLRLGDINDFPFVQAPDPRAVRDGMAQLSELGAVT
GTDSASARLTKIGKQLARLPVDPRLGRMLVAGHDNGCLDHLLVITAALALPDVREFPSDK
REAATAAHRRHAVPGSEFLGHLKLWEYLTARRAELSSSQFRKMCEREFLHFLRIREWIDL
HRQLRRTVSDLKWQIPDTEVDPAAVHRSVLSGLLTNIGARQGDSRDYLGTRGTKFAIFPG
SFLANKPPAFVVAAELVETSRLFAHTVASIDPAWVEELAGDLVTRTYSEPHWSTRRGAVM
AYEKVSLYGVPLVVQRRVNYGSIDPKTSREIFIQEALVAGRWRNRHAFFAHNAELLRDAS
ETEHRARRRDLRISDDELFEFYAARIPSTVVSTRHFDSWWKKAGRTDPALLNLRPEDLLG
DDVPTAADYPAAWQQGETRLELRYHFEPGAPDDGVTAIIPGPLLAHVRDTGFDWLVPGMR
AELATQLIKSLPKGLRKSMSPASRYAELALSRLSVRSEPLLTGLARELSSISGVTLAPRD
FNPSALPPHLRMHFAVTGTDGAIIARGDRLAALRTDLSADADRDRRAPLHREWTADGLGT
LADSETATVAGQTITRYPTLATVPGQGVRIAKAATSTERDAGIAAAAGELLRLAIAPPSR
KLASTLPPPAKLALSQSPYPDVDALLADCTARAVTDTLAREPELAALRSPGDFGALSARL
GPVIRSRAPEYFDAAVAALAEYSPVRRAVDARSGTLAADDVSDQVNDLIFDGFVGATALE
HLRSLPRYLTAARLRLESLNTAAGRDNEAMGAIDRVVAVWNRRLAQLPAARHEALNELVQ
WRLEELRVSLFAQQLGTNGPVSEQRIIKAIDKFS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgcgatcccgtctccggacctgtccgccctgacgatctcctatccgccggaa
ctcccggtcagcgcctgccgcgacgagatcgccgaggccgtctccgcacaccaggtggtc
gtgatcgcgggcgagaccggttcgggcaagacgacccagttgccgaagatctgcctcgaa
ctcggccgcacctcgatcggtcatacgcagcctcggcggatcgcggcgacgtcggtggcc
cggcggatcgccgacgagttgggcaccgagatcggcgggaccgtcgggtatcaggtgcgc
ttctccgacaaggtcggcaaggacacccgcatcaaggtgatgaccgacggcatcctgctg
cgcgagatcggccgggatccgcggctgtccggttacgacacgatcatcatcgacgaggcg
cacgagcgcagcctcaacatcgacttcctgctcggctatctcaagcagttgctgccgacc
agaccggatctcaagctcatcatcacctcggcgaccatcgagcccgaccgcttcgcccgg
catttcgccaccaccgcggacacggtgccgatcttggaggtctcggggcggacgtacccg
gtcgagattcggtatcggccgcgcgagagcgacgactccgaccacgacgacctcgatcag
atcgcggcgatcgacgcggcggtcggcgagctgtggtcgcacgccccgggcgacatcctg
gtgttcctgccgaccgagcgcgacatccgggacacggccgatgccctccgccgacgcagc
gcggccgagatcgttccgctgttcgcccggctgtcggtcggtgagcagcaacgggtgttc
gccccgtccaacggtcggcggatcgtgctggccacgaatgtcgccgagacgtcattgacc
gttcccggcatccggtacgtgatcgatgcgggtacggctcgcatctcccgctattcgacc
cgcaccaaggtgactcgtcttcccgtggaacgggtctcacaggccagcgcccgtcagcgc
gcgggtcgctgcggccgggtggcgccgggcatctgcatccgcctgtactcggaagacgat
ttcgacgctcgtccggagtacaccgacccggagatcctgcggagcaatctcgccgccgtc
atcctgtcgatgctgtcgctgcggctgggcgacatcaacgacttcccgttcgtgcaggcg
cccgacccgcgagcggtccgcgacggcatggcacagctgtccgaactgggagcggtcacc
ggcaccgattccgcgtccgcgcggctgaccaagatcggcaagcagctcgcgcggctgccc
gtcgacccgaggttgggccggatgctggttgccggacacgacaacggctgcctcgatcac
ctgctcgtcatcactgcggcgctggccctgcccgacgttcgggagttccccagcgacaag
cgggaggccgccaccgccgcccatcgccggcacgcggtgccggggtcggagttcctcggg
cacctcaagctctgggagtatctgacggccaggcgcgcggaactctcaagcagccagttc
cgcaagatgtgcgagcgagagttcctgcacttcctgcggatccgcgaatggatcgatctg
caccggcagctgcggcgcaccgtcagcgacctcaagtggcagatcccggacaccgaggtg
gacccggcagccgttcatcgcagcgtgctctccggcctgctgaccaacatcggtgcgcgg
caaggcgactcacgcgactatctgggcacccgaggcacgaagttcgcgatcttccccgga
tccttcctcgcgaacaaaccgcccgccttcgtcgtggccgccgaactcgtcgagacctcg
cgcctgttcgcacacaccgtggcctcgatcgatccggcctgggtcgaggagttggccggc
gacctggtgacgcgcacctactccgagccgcactggtccacccgccgcggcgcggtgatg
gcgtacgagaaggtcagcctgtacggagttcccctggtggtacagcgccgcgtgaactac
gggtcgatcgacccgaagacctcgcgcgagatcttcatccaggaggcactggtcgccgga
cgctggcgtaaccgtcatgcgttcttcgcccacaacgccgagctgctccgcgacgcgtcc
gagaccgaacatcgcgcgcggcgtagggacctgcgcatctccgacgacgagctcttcgag
ttctacgcggcgcgcataccgtccaccgtggtgtcgacacggcatttcgactcgtggtgg
aagaaggcgggccgcaccgatccggcgctgctcaacctccggcccgaggacttgctcgga
gacgacgtccccacggccgccgactatccggccgcctggcagcagggcgagacccgcctg
gagctccgctaccacttcgagcccggcgcacccgatgacggcgtgaccgcgatcatcccc
gggccgctcctggcacatgtgcgagacaccggattcgactggctcgtacccgggatgcgc
gccgaactcgcgacgcagctgatcaagtcgttgcccaagggcctgcgcaagtccatgtcc
ccggcgtcccggtacgccgaactcgctctcagccgactctcggtgcgcagcgagccactg
ctcaccggcctggctcgcgagctgtcgtcgatcagcggggtcaccctggctccgcgcgat
ttcaatccgtcggcactccccccgcatctgcggatgcacttcgcagtcaccggcacagac
ggcgcgatcatcgcgcgcggcgaccggctcgccgcgcttcgcaccgacctgtctgccgac
gccgaccgcgaccgccgtgcgcccctgcaccgcgaatggaccgccgacggtctgggcacc
ctcgccgactccgagacggcgaccgttgcgggacagacgatcacccgctatcccacgctc
gcgaccgtgccgggacagggcgtacgcatcgcgaaggccgccacctccaccgagcgcgac
gccggcatcgccgccgccgccggagaactcctgcgactcgcgatcgcgccgcccagccgc
aagctggcgtcgactctgccgccgccggccaagctcgcgctgagccagagcccgtatccg
gacgtggacgcgttgctggccgactgcacggcacgggcggtcaccgacaccctggcacgg
gagccggagttggccgccctgcgcagtcccggtgacttcggcgcgctctcggcgcggctg
gggccggtgatccggtcgcgcgcacccgagtacttcgacgccgccgtcgcggcgctcgcc
gaatactccccggtgcgccgggccgtcgacgcccggtccgggactctcgccgccgacgac
gtctccgatcaggtcaacgatctgatcttcgacggcttcgtcggcgcgacggcattggag
catctgcgctcgctgccgcgctatctgaccgccgcgcggctgcgcctcgagtccctcaac
accgccgccggccgggacaacgaggcgatgggcgccatcgacagggtggtggcggtctgg
aataggcgcctcgcccagcttccggccgcacgccacgaggcgctgaacgagttggtgcag
tggcgcctggaggaactccgcgtgagcctgttcgctcagcagctcggcaccaacggtcca
gtctccgagcagcggataatcaaggcgatcgacaagttcagctga
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