Gordonia sp. YC-JH1: CXX93_14045
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Entry
CXX93_14045 CDS
T05256
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CXX93_14045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goc03019
]
CXX93_14045
03016 Transfer RNA biogenesis [BR:
goc03016
]
CXX93_14045
Enzymes [BR:
goc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CXX93_14045
Messenger RNA biogenesis [BR:
goc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CXX93_14045
Transfer RNA biogenesis [BR:
goc03016
]
Prokaryotic type
tRNA degradation factors
CXX93_14045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_PNO1_2nd
OB_cyt-4
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
AUH69254
LinkDB
All DBs
Position
complement(3014909..3017176)
Genome browser
AA seq
755 aa
AA seq
DB search
MTDVNADFDDSITEVSAVIDNGSFGKRTIRFETGRLALQAAGSVTAYLDEGTMILSTTTA
SKSPKEHFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDG
LRNEIQIVETVLSLDPKDLYDVVAINAASASTQISGLPFSGPVGAVRVALIPTEQNKAGQ
WVAFPTVEQLEGAVFDMVVAGRLIDGGDVAIMMVEAEATDNVLALIADGAQAPSEAVVAE
GLEAAKPFIATLCEAQKQLAAAAAKETREFPLFPAYQDDAYEAVAEFATTRLGEAMAIAD
KQERDNATDALKGDVLEALGERFEGRESELGAAYRSLTKKLVRQRILTDHFRIDGRGITD
IRALSAEIGVVPRAHGSALFERGETQIMGITTLDMVKMAQQIDSLGPETSKRYMHHYNFP
PYSTGETGRVGSPKRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSV
CASTISLLNAGVPLKAPVAGIAMGLVSDEVTIDGKTETRYVALTDILGAEDAFGDMDFKV
AGTKDFVTALQLDTKLDGIPSKVLAGALSQAKQARLTILDVLAEAIDEPDEMSPYAPRIT
TIKIPMDKIGELIGPKGKTINGITEETGANISIEDDGTVFIGAADGPSAQAAIDKVNAIA
NPQLPKVGERFLGTVVKTAAFGAFVSLLPGRDGLVHISKLGNGKRIGKVEDVVKVGDKLQ
VEIADIDERGKISLVPVRDGADAAEAAKDEVAVDA
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
ttgactgacgtcaacgccgacttcgatgattcgatcaccgaagtctccgccgtcatcgac
aacggatcgttcggcaagcgcacgatccgcttcgagaccggccgcctggctctgcaggcc
gcgggttcggtgaccgcgtacctcgacgagggcacgatgatcctctcgacgaccaccgcg
tccaagtcgccgaaggagcacttcgacttcttcccgctcacggtcgacgtcgaggagcgc
atgtacgccgcgggtcgcatccccggctcgttcttccgccgcgagggccgcccgtcgacc
gacgcgatcctcacctgccgcctcatcgaccgtccgctgcgtccgtcgttcgtcgacggc
ctgcgcaacgagatccagatcgtcgagaccgtcctgtcgctcgaccccaaggacctctac
gacgtggtcgcgatcaacgcggcgtccgcatccacgcagatctcgggtctgccgttctcc
ggtccggtgggcgccgtgcgcgtcgcgctgatcccgaccgagcagaacaaggccggccag
tgggtcgccttccccaccgtcgagcagctcgagggcgcggtcttcgacatggtcgtcgcg
ggacgcctgatcgacggcggcgacgtcgcgatcatgatggtcgaggccgaggccaccgac
aacgtcctcgcgctgatcgccgacggcgcccaggcgccgagtgaggccgtcgtcgccgag
ggcctcgaggccgccaagccgttcatcgccaccctgtgcgaggcgcagaagcagctcgcc
gcggccgccgcgaaggagacccgcgagttcccgctgttcccggcctaccaggacgacgcc
tacgaggcggtcgccgagttcgccaccacccgcctcggcgaggcgatggcgatcgccgac
aagcaggagcgcgacaacgcgaccgacgcactcaagggcgacgtgctcgaggcgctcggc
gagcgcttcgagggccgcgagagcgagctcggcgcagcctaccggtcgctgaccaagaaa
ctcgtgcgtcagcgcatcctcaccgatcacttccgcatcgacggtcgcggcatcaccgac
atccgtgcgttgtccgccgagatcggcgtcgttccgcgcgcacacggcagcgcgctgttc
gagcgtggcgagacccagatcatgggcatcaccaccctggacatggtcaagatggcccag
cagatcgattcgctcggccccgagaccagcaagcggtacatgcaccactacaacttcccg
ccgtactcgaccggtgagaccggccgcgtgggttcgcccaagcgccgcgagatcggtcac
ggtgcgctcgccgagcgggccctggtgccggtgctcccgagcgtggaggagttcccgtac
gcgatccgtcaggtctccgaggccctcggctccaacggctccacctcgatgggctcggtg
tgtgcgtcgaccatctcgctgctgaacgcgggcgttccgctgaaggcgccggtcgcaggc
atcgcgatgggcctcgtctccgacgaggtcaccatcgacggcaagaccgagacccgctac
gtcgccctgaccgacatcctcggagccgaggacgcgttcggcgacatggacttcaaggtc
gcgggcaccaaggacttcgtgacggctctgcagctcgacacgaagctcgacggcatcccc
tccaaggtcctggccggtgcgctgagccaggccaagcaggcccgtctcaccattctcgac
gtgctggccgaggccatcgacgagccggacgagatgagcccgtacgcgccgcgcatcacc
accatcaagatcccgatggacaagatcggtgagctgatcggcccgaagggcaagacgatc
aacggcatcaccgaggagaccggcgccaacatctcgatcgaggacgacggcaccgtgttc
atcggcgccgcagacggcccgtccgcgcaggcggcgatcgacaaggtcaacgccatcgcc
aacccgcagctgccgaaggtcggcgagcgcttcctgggcaccgtcgtcaagacggccgcc
ttcggcgccttcgtctccctgctccccggccgcgacggactggtccacatcagcaagctg
ggcaacggcaagcggatcggcaaggtcgaggacgtggtcaaggtcggcgacaagctgcag
gtcgagatcgccgacatcgacgagcgcggcaagatcagcctcgttccggtgcgcgacggc
gccgatgcggccgaagccgcgaaggacgaggtcgcggtcgacgcctga
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