Gordonia sp. YC-JH1: CXX93_14550
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Entry
CXX93_14550 CDS
T05256
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CXX93_14550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goc03019
]
CXX93_14550
03009 Ribosome biogenesis [BR:
goc03009
]
CXX93_14550
Enzymes [BR:
goc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CXX93_14550
Messenger RNA biogenesis [BR:
goc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CXX93_14550
Ribosome biogenesis [BR:
goc03009
]
Prokaryotic type
rRNA processing factors
CXX93_14550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
AUH69334
LinkDB
All DBs
Position
complement(3118482..3121643)
Genome browser
AA seq
1053 aa
AA seq
DB search
MTDNGSSADATSADQPAEKFPLRLRVHALARTLGLTSKQVLAHLQEMGVTARTAQSSISR
ADAEAVELRISGAVEDAADEAGEPGAPSLFSAVETPQPVSTAKAEATAPLFLAADADETA
PAGEKTAEAKNTEAKKAGGKKSDGKKADSKKSDGKKADGKKAEGKKAESKKAETTDIPES
DGSEKQADKKPGKKKASAKKPKKSEVDEAGTGDETPAAPETATAPVEPESEVPAAGGEDD
EQTSGESESRSRRRRRGRRGRGRGRGDQGPEGSDSESDDAQDGVESDQNTAETSGPEKNG
PDDDTADADQTQADATGSESDEETEADSEAAVPSSKRRRRRRRRRGGSDSDETVSADDPP
NTVVHEREPRAKKVRDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPILTESEFLARRESV
ERVMVVRERAASGAGDGHDQHAAPVEDYTQIAVLEDGVLVEHFVTTETSQSMVGNIYLGR
VQNVLPGMEAAFVDIGRGRNGVLYAGEVNWEAAGLDGGSRKIEQALKPGDHVLVQVSKDP
IGHKGARLTTQISLAGRYLVYVPGGTSTGISRKLPDTERKRLKQILAKLVPDEAGVIIRT
ASEGVSAEELGADIERLEAQWKSIEAAADDHRSKAPGTPKALYEEPDLLVRVVRDLFNED
FRKLVVEGERAWSQVSGYVNDVAPDLAERLERFTKAHADAPDSFTVHRIDEQLAKALDRK
VWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGG
MIIVDFIDMVLESNRDLVLRRLTETLARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFS
TTCTACSGRGVIVHANPVEVRPAEDGSRNGGDGGSRKSRRSRRRGGDQQPQQEAAAPAKP
APHKPAAEHPLFRAMAHPDDHDEHDAAAEPAADTSVPEVKAPEVENAEVEIAEVAVAEVA
ATDGAVSEIAAEVVVETMTQTPEPPVAVVTRRRRRAVRRAAAPTTAVESVDEVAEHEPVT
TVAEQSAEPVVAVTRSPRRRSGRRAAGPPPTQQ
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
gtgacagataacgggtcgtcggctgatgccacttcggcagatcagccagcggaaaaattc
ccccttcgactccgcgtgcatgcgctcgcccgcacgctcggactgaccagcaagcaggtg
ctcgcgcacctgcaggagatgggggtgacggcgcgcaccgcgcagtcgtcgatctctcga
gccgacgccgaagccgtcgagctccgtatcagtggtgccgtcgaggatgcggcagatgag
gccggagagccgggggcgccgtcgctgttctcggcggtcgagacgccgcagccggtgtcg
acggcgaaggccgaggcgaccgcgccgctgttcctggcggcggacgccgatgagaccgct
ccggccggtgagaagacggccgaagccaagaacaccgaagccaagaaggccggcggcaag
aagtcggacggcaagaaagccgacagcaagaagtcagacggcaagaaagctgacggtaag
aaggccgagggcaagaaggccgagagcaagaaggccgagaccacggacatcccggaatcg
gatgggtccgagaagcaggccgacaagaagccgggcaagaagaaggcgtcggcgaagaag
cccaagaagtccgaggtcgacgaggcaggcaccggtgacgagacgccggccgctccggag
accgccacagcgcccgtcgagcccgagtcggaggttccggcagccggcggggaggatgac
gaacagacgtccggcgagagcgagagccggtcccgcaggcgcaggcgcgggcgtcgcggg
cgcggtcgcggacgcggcgatcagggccccgagggatccgacagtgagtcggacgacgct
caggacggcgtggagtcggaccagaacaccgccgagacgagcggtcccgagaagaacggg
ccggacgacgacacggccgatgcggaccagacacaggccgatgcgaccggatcggagtcg
gacgaagagaccgaggcggactccgaggcagcggtcccgtcgagcaagcggcgtcgccgc
cggcgccgccgccgtggcgggtccgactcggatgagacggtctcggcggacgatccgccc
aacaccgtggtccacgagcgtgagccgcgcgccaagaaggtgcgtgacgaggtgcagggc
atctcgggttccacgcggctggaggcgaagcggcagcgcaggcgagacggtcgtgacgcc
gggcggcgtcgtccgccgatcctgaccgagtcggagttcctggcgcgccgggaatcggtg
gagcgcgtgatggtggtgcgtgagcgcgccgcctccggtgcgggcgacggccacgatcag
catgcggcgccggtggaggactacacgcagatcgccgtcctggaggacggcgtgctggtg
gagcacttcgtcaccaccgagacctcgcagtcgatggtcggcaacatctacctggggcgc
gtgcagaacgtgcttccgggcatggaagccgccttcgtcgacatcggccgcggacgcaac
ggcgtcctctacgccggcgaggtcaactgggaggccgccggcctcgacggcggctcgcgc
aagatcgaacaggcgctcaagccgggcgaccacgttctggtccaggtcagcaaggacccg
atcgggcacaagggcgcacggctgacgacgcagatctccctcgccggccggtacctggtg
tacgtgccgggcgggacgtcgacgggtatcagccgcaagctccccgacaccgagcgcaag
cgtctcaagcagatcctggccaagctcgttccggacgaggccggcgtcatcatccggacc
gcgtccgagggcgtcagcgccgaggaactcggtgcggacatcgagcgcctcgaagcacag
tggaagagcatcgaggcggcggccgacgatcaccggtcgaaggcgccgggcactccgaag
gcgctgtacgaagagccggatctgctggttcgagtggtccgtgacctgttcaacgaagac
ttccgcaagctggtcgtcgagggcgaacgcgcgtggtcgcaggtgtcggggtacgtcaac
gatgtcgccccggacctcgccgagcggctcgaacgcttcaccaaggcgcatgccgacgcg
cccgactcgttcaccgtgcaccgcatcgacgagcaactggccaaggcgctcgaccgcaag
gtgtggctgccgtccggcggcacgctgatcatcgagcacaccgaggcgatgacggtggtc
gacgtgaacaccggcaagttcaccgggtccggcggcaacctcgaggagaccgtcactcgc
aacaatctcgaagccgccgaggagatcgtgcggcagatgcgcttgcgcgacatcggcggc
atgatcatcgtcgacttcatcgacatggttctcgaatcgaaccgcgacctcgttctgcga
cggctcaccgagactctggctcgggaccggacccggcaccaggtctccgaggtcacctcg
ctgggactggtgcagatgacccgcaagcggctcggcaccggactcctcgaggcgttctcg
accacctgcaccgcgtgctcgggtcgcggggtgatcgtgcacgccaatccggtggaggta
cgcccggctgaggacggaagccgcaacggcggcgacggaggttcgcgcaagtcgcgccgc
tcgcgtcggcgcgggggagaccagcagccgcagcaggaggcggcggcgccggccaagccc
gcaccgcacaagccggccgccgagcatccgctgttccgcgccatggcgcatccggacgat
cacgacgagcacgacgcggcggccgagccggccgccgatacctcagtgcccgaggtgaag
gcgcccgaggtcgagaatgccgaggtcgaaatcgcggaggtggccgtggccgaggtcgct
gccacagacggtgcagtgagcgaaatcgccgcggaggtcgtcgtcgagacgatgacgcag
acaccggagccgccggtggcggtggtgacgcgtcgacgtcgtcgcgcggtacgccgtgcg
gccgcaccgacgacggcggtcgagtcggtggacgaggtcgcagagcatgagccggtgacg
acggtggccgaacagtccgccgagccggtggtcgcggtcactcgctcgccccggcggcgc
agtggtcgccgcgccgcgggcccgccgcccacgcagcagtga
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