Gordonia sp. YC-JH1: CXX93_15160
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Entry
CXX93_15160 CDS
T05256
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CXX93_15160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goc03019
]
CXX93_15160
03009 Ribosome biogenesis [BR:
goc03009
]
CXX93_15160
Enzymes [BR:
goc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CXX93_15160
Messenger RNA biogenesis [BR:
goc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CXX93_15160
Ribosome biogenesis [BR:
goc03009
]
Prokaryotic type
rRNA helicases
CXX93_15160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
UvrA_inter
CMS1
P-loop_SecA
HEM4
Flavi_DEAD
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AUH69426
LinkDB
All DBs
Position
complement(3255616..3257406)
Genome browser
AA seq
596 aa
AA seq
DB search
MSESENTSSTAPAAEKSTAFGDLGIDPGVLKALDDVGYETPSPIQAATIPPLMEGRDVVG
LAQTGTGKTAAFALPILTRLDTSARKPQALVLAPTRELALQVAEAFGSYSTYLPEVKVLP
IYGGQSYGIQLSGLRRGAQVIVGTPGRVIDHLDKGTLDLSQLEFLVLDEADEMLTMGFAE
DVERILADTPDQKQVALFSATMPAAIGRLARKYLNNPQEVTVKNKTATAQNITQKYLQVS
HQRKLDALTRVLEVEPFDGMIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTI
NQLKDGSLDILVATDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAGRSGTALLF
VSPRERHLLRSIERHTRQDLEEIDLPSVDDVNAQRVAKFADSITENLASDNLDLFRGLVE
NYARENDVAMADIAAALALETRDGGFLMAPDPPKGERGDRGDRRDRAPRGGGHFATYRIA
VGRKHKVSPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPNDLDAETLGMLKHTKIGK
HPIDLRPDMGPPRGRGGARGSARGYEDRGRKGGYRKGGDKFGKRPARVAGRGRDSR
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatccgagaacaccagctctaccgcgcccgcggccgagaagtccaccgccttc
ggtgacctcggcatcgaccccggcgtgctcaaggcgctcgacgacgtcggctacgagacg
ccgtcgccgatccaggcggcgaccatccctccgttgatggagggacgcgacgtcgtcgga
ctggcgcagaccggcaccggcaagaccgctgccttcgcactgccgatcctcacccgactc
gacacctcggcccgcaagccgcaggccctcgtgctcgcgcccacgcgcgaactggcgctg
caggtggccgaggccttcggcagctattcgacgtaccttcccgaggtcaaggtgctgccg
atctatggcggccagagctacgggatccagctgtccggcctgcgccgcggagcccaggtg
atcgtcggcacgccgggccgcgtgatcgatcatctcgacaagggcaccctcgacctgtcg
cagctcgagttcctcgtgctcgacgaggccgacgagatgctgacgatgggcttcgccgag
gacgtcgagcgaatcctcgccgacaccccggatcagaagcaggtcgcgctgttctccgcg
accatgccggccgccatcggccgcctggcgcgcaagtacctgaacaacccgcaggaagtc
accgtcaagaacaagacggcgaccgcgcagaacatcacgcagaagtacctgcaggtgtcg
caccagcgcaagctcgacgccctcacgcgggtgctcgaagtggagccgttcgacggcatg
atcgtcttcgtccggaccaagtcggccaccgaggagctcgccgagaagctgcgagctcgc
ggcctgagcgcgatggcgatcaacggcgacatggtccaggcccagcgtgagcgcaccatc
aatcagctcaaggacggttcgctcgacatcctcgtggccaccgacgtggccgctcgagga
ctggacgtcgaccgcatctcgcatgtggtgaactacgacatcccgcacgacgtcgagtcg
tacgtgcaccgcatcgggcgtaccggccgggccgggcggtcgggcaccgcgctgctgttc
gtctcgcctcgcgaacgtcatctgctgcggtcgatcgagcgccacacgcggcaggatctc
gaagagatcgatctgccgagcgtcgacgatgtgaacgcccagcgcgtcgccaagttcgcc
gattcgatcaccgagaacctcgcctccgacaatctggatctgttccgcgggctggtggag
aactacgcccgcgagaacgacgtcgcgatggccgacatcgccgcggcgctggccctggag
acccgcgacggcggcttcctgatggctcccgatccgcccaagggcgagcggggcgatcgc
ggggaccggcgtgaccgtgcaccgcgcggcggcggtcatttcgccacgtaccgcatcgcc
gtcggccgcaagcacaaggtgtcgccgggcgcgatcgtcggcgcgatcgccaacgagggc
ggcctcactcgcggtgacttcggcaacatcagcatccgcgacgacttcagcctcgtggaa
ctccccaacgatctcgacgccgagacgctcgggatgctcaagcacaccaagatcggcaag
catccgatcgacctgcgcccggacatgggtccgccgcgcggtcggggaggcgcccgcgga
tcggcgcgcggatacgaagaccgcggccgcaagggcggttaccgcaagggcggcgacaag
ttcggcaagcgaccggcccgcgtggccggccgcggtcgcgacagtcgctag
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