Gordonia sp. YC-JH1: CXX93_18030
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Entry
CXX93_18030 CDS
T05256
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CXX93_18030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_18030
Enzymes [BR:
goc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CXX93_18030
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CXX93_18030
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CXX93_18030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Ribosomal_S13
Arg_repressor_C
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
AUH69858
LinkDB
All DBs
Position
complement(3891222..3892118)
Genome browser
AA seq
298 aa
AA seq
DB search
MPELPEVTAIATYLDSRAAGLPIRRVDVASLAVLKTADPPYTALTGRIVSSVDRIGKYLV
IRTAPGPAAGDAAVDDEIDLVIHLSRAGWVRWSDSLSQTPPKPGGKGPIALRVHCGLPGE
GFDVTEAGTQKRLAAWIVRDTAEVERIAGLGPDVLALDRDQFAALLAGSSARIKNLLTDQ
RVVAGVGNAYSDEILHTARLSPFATSKSLSDKQIDDLYRAVRSVLHDAIERLEGQEVARL
KSEKRTGLRVHARTGLPCPVCGDTVREVSFADRSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgccggagcttcccgaagtgaccgccatcgcgacgtacctcgactcgcgggccgccggc
ctgccgatccggcgggtcgacgtcgcctcgctcgccgtgctcaagaccgccgatccgccg
tacacggcgctgacgggccgcatcgtgtcgagcgtcgaccgtatcgggaagtacctggtg
atccggaccgcgcccgggcccgcggccggcgatgccgcggtcgacgacgagatcgacctg
gtgatccacctgtcccgtgccgggtgggtgcgttggagcgactcgctctcgcagactccg
ccgaaaccgggaggcaagggccccatcgcgctgcgcgttcactgcgggctgcccggtgag
ggcttcgacgtcaccgaggccgggacacagaagcggctggcggcctggatcgtgcgcgac
accgcagaagtggaacggatcgccggcctcgggcccgacgttctggcgctggaccgcgac
cagttcgctgcgctcctcgccggcagcagcgcgcggatcaagaacctgctgaccgatcag
cgggtcgtcgccggggtgggcaacgcctactcggacgagatcctgcacaccgctcggctg
tcgcccttcgccacgtcgaagagcctctcggacaagcagatcgacgacctgtaccgggcc
gtccgctcggtgctgcacgatgcgatcgaacggctcgaaggacaggaggtggcccgcctc
aagtcggagaagcgcaccgggcttcgggtccacgcgcgcaccggcctgccctgtccggtg
tgcggcgacaccgtccgtgaggtgtccttcgccgaccgctcgttccagtactgcccgacg
tgtcagacgggcggcaaggtgctggccgaccgccggatgtcgcggctgctgaagtag
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