Gordonia sp. 135: GKZ92_03555
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Entry
GKZ92_03555 CDS
T06305
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
god
Gordonia sp. 135
Pathway
god03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
god00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKZ92_03555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
god03019
]
GKZ92_03555
03400 DNA repair and recombination proteins [BR:
god03400
]
GKZ92_03555
Enzymes [BR:
god01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GKZ92_03555
Messenger RNA biogenesis [BR:
god03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GKZ92_03555
DNA repair and recombination proteins [BR:
god03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GKZ92_03555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
DUF3458_C
RecQ_Zn_bind
Cas3-like_C_2
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
QGP86808
LinkDB
All DBs
Position
complement(773603..775714)
Genome browser
AA seq
703 aa
AA seq
DB search
MTATLSPDQLTAANRVITSLAGEGAALREDQLRAVTALAGGEPGTPGARVLVVQATGWGK
SAVYWSATAIIRAGGGGPTLIVSPLLSLMRDQVSAAARGGLSAATLNSSNVDEWSAIEAQ
LRAGDLDVLLVSPERLANPGFGRRVLDALAGNLGLLVIDEAHAVSDWGHDFRPDYRRVAD
VLRSVNPTTPVLATTATANARVTEDVAAQLDAGSDAPTLVLRGPLARKSLHLNVLDGLSP
VQRYGWVAQALPHLPGSGIVYVLTVADADRLVEAIRAVHGDSVEVAAYTGQLDADRRHEL
EDALLHNKVKALVATSALGMGYDKPDLGFVVHVGSPPSPVSYYQQVGRAGRSLDDAVVML
LASQTDDRIWDHFATATIPDPDKMRDLLAALEAADEPQSPIQLEAATRFRRTRIELMLKQ
LAVDGITDRTPDGWVATGKPWTYDAAHYDGVLAVRRREADIMRSYIAGRTCLMRLLTESL
DDPQAADCGRCSVCRGALSEGLPDSVDAEVVRTVTSTLRRKASTLDPRKMWPGGEFGRRG
RIPADLLAQPGRVLAHADAPEWVEVLAAARNGDERALAELGDAAVATLSSWVRETGIRAD
VIVSLRLTGTNLAETLAEHLRTVGKRGGGTFPVHLGDPPTDATGAVEAAYWRDHLGDPPE
VAGQNVMLVVDANSSGWPITLAAAALREAGAGAVLPLLIHRTV
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaccctctcccctgaccagctgaccgccgccaaccgcgtgatcaccagcctg
gccggtgagggcgccgcgctgcgcgaggaccagctgcgcgcggtgaccgcgctggccggg
ggcgagcccggcacacccggcgcgcgggttctcgtggtccaggcgaccggatggggcaaa
tccgcggtctactggtcggccaccgcgatcatccgcgccggtggcggcggaccgacgctg
atcgtctccccgctgctgtccctcatgcgcgaccaggtgtccgcagcggctcgtggcggc
ctgtccgcggcgacgctgaactcgtcgaacgtcgacgagtggtcggcgatcgaggcgcag
ttgcgggcgggtgacctcgacgtcctgctcgtctcgccggaacgcctcgccaatcccggc
ttcggacgacgtgtgctcgacgcactggccggcaacctcggactcctggtgatcgacgag
gcgcacgccgtctccgactggggtcacgacttccggcccgactaccgtcgcgtggccgac
gtgctccgctcggtcaacccgacgacgccggtcctggcgaccaccgcgaccgccaacgcg
cgcgtcaccgaggacgtcgccgcccagctcgacgccggttccgacgcaccgacactcgtc
ctccgtggaccgctcgcccggaagtcgttgcatctcaacgttctcgacggactctcaccc
gtccagcgctacggctgggtggcgcaggccctcccccatctcccgggttcgggcatcgtc
tacgttctcaccgtcgccgacgccgaccggctggtcgaggccatccgcgcggtacacggc
gattcggtcgaagtcgccgcctataccggccagctcgacgccgaccgccggcacgaactc
gaagatgcgttgctgcacaacaaggtcaaggcgctcgtcgcgacgtcggccctcgggatg
ggctacgacaagccggacctgggtttcgtcgtacacgtcggttcgccgccgtcgccggtc
tcctactaccagcaggtgggtcgtgccgggcgttccctggacgacgccgtcgtgatgttg
ctggcctcgcagaccgacgaccggatctgggatcacttcgccaccgcgacgatccccgat
cccgacaagatgcgcgatctgctggcagcactggaggccgccgacgaaccgcagtcgccc
atccagctcgaggccgccacccgcttccgccgtacgcgaatcgagttgatgctcaagcaa
ctcgccgtcgacggcatcaccgaccgcacccccgacggctgggttgccaccggcaaaccc
tggacctacgacgccgcgcactacgacggcgtgctcgcggtccgtcgccgcgaggccgac
atcatgcgctcctacatcgccgggcgcacctgtctgatgcggctgctgaccgaatcgctc
gacgacccacaggccgccgactgcggtcgctgctcggtctgccgcggcgcgctgagtgag
ggactccccgactccgtcgatgcggaggtggtccgcaccgtcacgtcaacgctgcgccgc
aaggcgtcgaccctcgatccgcggaagatgtggccgggcggcgaattcggccgtcgcgga
aggattcccgcagacctcctcgcccagccgggtcgcgtcctcgcacacgccgacgccccc
gaatgggtggaggtgctggccgccgcccgcaacggcgacgaacgcgcactggccgaactc
ggcgacgccgccgtcgcgacgctgtcctcctgggtccgcgagacgggtatccgcgccgac
gtcatcgtgtcgctccgcctgaccggcaccaatctggccgagacgctcgccgaacatctg
cgcacggtcgggaaacggggcggcggaaccttccccgtccacctgggcgatccgccgacc
gatgccaccggggcagtcgaggccgcctactggcgcgaccacctcggcgatccacccgag
gtcgccggacagaacgtgatgctcgtcgtcgacgccaacagctcgggctggccgatcacc
ctcgccgccgcggcactccgtgaggccggggccggtgccgtcctaccgctgctgatccac
cggacggtctga
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