Gordonia sp. 135: GKZ92_04520
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Entry
GKZ92_04520 CDS
T06305
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
god
Gordonia sp. 135
Brite
KEGG Orthology (KO) [BR:
god00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
god03400
]
GKZ92_04520
Enzymes [BR:
god01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GKZ92_04520
DNA repair and recombination proteins [BR:
god03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
GKZ92_04520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Exonuc_V_gamma
Motif
Other DBs
NCBI-ProteinID:
QGP86985
UniProt:
A0A6I5Z888
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Position
977615..980425
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AA seq
936 aa
AA seq
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MTADVESLNVGVAIAKSGSPLTQVTVVVPSHGSGRDILHHLARTQGVANTSVLTLAQVAD
KLAAPALAPRQPLPYPLLEAAIQRVLADAPGVFAEVADEPITSQALASAAWELTGIAEPA
MQSPTPLVADLLRIHRTTTARLTGSYYLQHEAYSAAAERLDELGAVIVYHPAAHTPAEQA
LLRELQRRGETIDANTHVSPTQVIHTSDADDEIRAVVRLVRKHLASGVPGHRIGIFYGTE
DPYLPLLHEHLTAGHIAFTGPECHTLVDRPTGRALLGLLALDHDAMPRRELFTLLAEGAL
RRPELDDTPITQPQLERLTRSDEPIVGGADWERLTRVGAHEKHHARAAAVHSYVRRLQAD
LRALVDAPDWATVAEHLNTLLDTYFRTPKRETAAADLAAIRGDCAGIALMDGIAPQRTAA
RVLDAVSIRLNAHRGMHGTSGAGVTVAPISSGVGRDLDVCVVIGAAEGIVPAPRRDDPLL
PPELIGITARDHMERQRLAFAGAVSAGRAERVVTFPRGNLRGGAEKVPSRWLLPALADLA
GRDVDVVNWQRATENSPQIVAVDSFDVAAQRADERIGASAASATEWRLRELAAVPADSRR
GALDDPIINRGMHMRSDRLNGRFTRFNGNLSSVSELITTFDQPVSPTGLELWVQSPYQYF
LEHILRLRALDDPDEIAQIDALTRGTLIHTILERYVRETMDGAELDLARLRIVAAEVLDE
AQANSPGWLEQLWAKDRGTIMRDLDEWFTHDHADAADGWRPTHAEADFGLDAQGSHEVSL
ALGENRIRFRGQVDRIDRHHGGRIRVTDYKTGKADKYKDLAESTPTNSGLQFQLPVYGLF
ARTFGADVEARYWFITSKGKFASVGYPVTDDVVATLIDDMTLVHKSIRAGYFPPKIEDTH
WDLPVIDLLGRAGLRRAWAALEHVDELSDYVQKYGG
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgatgtcgagagtctgaacgtgggcgtcgcgatcgccaagtccggctcaccg
ctgacccaggtcaccgtcgtcgtgccgagccacggctccggccgggacatcctgcaccac
ctggcccggacgcagggggtggccaacaccagcgtcctcacgcttgcgcaggtggcggac
aagctcgccgcccccgcgcttgcgcctcgccaaccgttgccgtatccgctcctggaggcg
gcgatccagcgagttctcgccgacgcaccaggtgtcttcgccgaagttgccgacgagccc
atcacgtcacaggctctcgcgagcgcagcctgggaactcaccggtatcgccgagcccgcg
atgcagtcgccgacgccactcgtcgccgacctgctgcgcatccatcgcaccaccacagcg
cgtttgaccggctcgtattaccttcagcacgaagcgtattcggccgccgccgaacgactc
gacgagctcggggcggtgatcgtctatcacccggccgctcacacgcccgctgagcaagcc
cttctccgtgagctccagcgccgcggcgagaccatcgacgcgaacacccacgtctcaccc
acccaggtcatccacacctccgacgccgacgacgagatccgcgctgtcgtccggctggtc
cgcaaacacctcgccagcggggttcccggtcaccgcataggcatcttctacggcaccgaa
gacccctaccttccgctgctccacgagcacctgaccgccggccacatcgcgttcaccgga
cccgaatgccacaccctcgtcgaccgtcccaccggtcgcgcactactcggtcttctggca
ctcgaccacgacgcgatgccccgacgggaactgttcaccctcctcgccgaaggcgccctc
cgacgccccgaactcgacgacacgccgatcacgcagccccaactcgaacgcctcacgcgc
agcgacgaacccatcgtcggcggcgccgactgggagcgcctcacccgcgtcggtgcgcac
gagaaacaccacgccagggccgcggccgtccactcgtacgtgcgtcggctgcaggccgac
cttcgcgctctcgtcgacgcgccggactgggcgaccgtcgccgaacatctgaacaccctg
ctcgacacctactttcgcacgccgaaacgcgagaccgcggccgccgacctcgccgcgatc
cgtggcgactgcgcggggatcgccctgatggacggcatcgcaccgcagcgcaccgcggct
cgggtgctcgacgcggtttcgatccggctgaacgcgcaccgaggcatgcacgggacgtcg
ggtgcaggcgtgacggtcgcaccgatctcatccggcgtcggccgcgacctcgacgtctgc
gtcgtcatcggtgccgccgaaggcatcgtgccagcaccccgccgcgacgacccgcttctc
ccgccggaactgatcggcatcaccgcccgcgatcacatggagcgtcaacgcctcgccttc
gccggtgccgtgagtgccgggcgcgccgaacgggtcgtcaccttcccgcgcggcaacctg
cgcggcggcgccgagaaggtaccgtcccgctggctgctgccggcgctggccgacctcgcc
ggccgcgacgtcgacgtcgtcaactggcaacgcgcgacggagaattcaccgcagatcgtc
gcagtcgactccttcgacgtcgccgcccagcgcgccgacgagcgcatcggcgcctccgcc
gcctccgccaccgagtggcgtctccgcgaactcgccgccgtcccagcagacagtcgtcgc
ggcgcgctcgacgatccgatcatcaaccgtggcatgcacatgcgcagcgaccgcctcaac
ggccgcttcacccggttcaacggcaacctgtcgtcggtcagcgaactcatcaccaccttc
gatcagccggtgtcgccgaccggcctcgaactgtgggtacagagcccctatcagtacttc
ctcgaacacatcctccgcctgcgtgccctcgacgaccccgatgagatcgcccagatcgac
gcattgacgcgggggaccctgatccacaccatcctcgagcggtatgtccgcgagacgatg
gacggcgcagagctcgacctcgcccgcctacggattgtcgccgcagaagttctcgacgag
gcgcaggccaacagtccgggctggctcgaacagctgtgggccaaggaccgcggcaccatc
atgcgcgacctggacgaatggttcacccacgaccacgccgacgccgccgacggctggcgg
ccgactcacgccgaggcggacttcggtctcgacgcgcaaggcagtcacgaggtctcactg
gcattgggtgaaaacaggattcgcttccgcgggcaggtcgaccgcatcgatcgccaccat
ggcggccgcatccgcgtcaccgactacaagaccggcaaggccgacaaatacaaggacctc
gccgagagcacacccaccaactcgggtctgcaattccagctccccgtctacggactgttc
gcccgcaccttcggcgccgacgtcgaagcccgctactggttcatcaccagcaaaggcaag
ttcgcatcggtcggctaccccgtcaccgacgacgtcgtcgccaccctcatcgacgacatg
acgctcgtgcacaagtcgatccgggccggctacttcccgcccaagatcgaagacacccac
tgggacctgcccgtcatcgacctcctcggacgtgccgggctgcgacgcgcctgggccgca
ctggaacacgtcgacgaactgtccgactacgtgcagaagtacggaggctga
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