Gordonia sp. 135: GKZ92_07365
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Entry
GKZ92_07365 CDS
T06305
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
god
Gordonia sp. 135
Pathway
god03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
god00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GKZ92_07365 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
god03400
]
GKZ92_07365 (mfd)
Enzymes [BR:
god01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GKZ92_07365 (mfd)
DNA repair and recombination proteins [BR:
god03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GKZ92_07365 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
DUF3638
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QGP87472
UniProt:
A0A6I5ZB72
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All DBs
Position
1607313..1610888
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AA seq
1191 aa
AA seq
DB search
MSTPRALSGLAALACADKSFREVHERRAERRLDITAPDAARPFLVSCLAAGAEAPLLVVS
ANGREADDLTAELAELLDDADSVAQFPSWETLPHERLSPSADTVGQRLAVLHRLANPGDN
PLRVVVTTVRSLVQPMAPGLGEVATVTLREGIEVDFDGLLAQLVEMAYERVDMVGRRGEF
AVRGGILDVFPTTADHPVRVEFWGDEITEIRAFSVADQRSQPEVDASEVRIHPGRELLLS
EKVRTRASDLAAKNPDDTALTEMLGKLAEGIPVEGMEALIPALVDGEMQLLTEVVPDGTR
VLILDPEKVRTRAADLSKTGAEFLEASWTAAAMGANAPIDPRSGTGIDLQASAYRSLGDV
REATLQAKRPWWTLSPLSTGSGNELELDLTPGPAPRGDEREIAATFAQLRAHVSDGKTAA
IVVTGKGTAQRVGERLSEAEVPYVIAEPGHRPEPGEVTVFGATLRAGIVCADAGLVVVTE
ADLTGTRVANVRDGRKLPAKRRNQVDPLALAAGDLVVHDQHGIGKFVEMIERTVSGARRE
YLVLEYASSKRGQPADRLYVPMDALDQLSRYVGGEQPSLSKLGGSDWQNTKRKARKAVRE
IAGELVQLYAARHAAPGHAFGPDTPWQQEMEDAFDFTETVDQLTVIAEVKSDMERPVPMD
RVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQHLQTFTERMSGFPVRVRGL
SRFTDAKESREITEAMAKGEVDIVIGTHRLLQTGITWKDLGLVIVDEEQRFGVEHKEHIK
SLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYAPKQVAAAIR
RELLRDGQVFYVHNRVSTIDKTAKDIAAMIPEARVVVAHGQMGEDQLERTVSGFWNREYD
VLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVGRSRERGYAYLLYSPDRPLT
ETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAV
EAYRAAADGKPVETQETGEVRIDLPVDAHIPVEYVDSDRLRLEAYRKLASATDDAEVDAV
LVELNDRYGPPPVETTRLASIARLRLRCRERGITEIGLAGQGVKISPLPLLDSEQVRLRR
LYSSATFRATTSVVTLPIPRTGGVGSARLRDDELIEYLTTFLTQLKPEPNA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgacgccccgtgccctgtccggtctggccgcgctcgcgtgtgcggacaaatccttc
cgcgaggtgcacgaacgccgtgccgaacgtcgcctcgacatcaccgcacccgacgccgcc
cggccgttcctcgtctcctgtctggccgccggcgccgaggccccgctgctggtcgtctcg
gccaacggtcgcgaggccgatgacctgacggccgagttggccgaactcctcgacgacgcc
gactcggtggcccagttcccctcgtgggagaccctcccgcacgagcggctgtcgccgagc
gcggacaccgtcggccagcgactggcggtgctgcaccgtctcgccaatcccggcgacaac
ccgctgcgggtcgtggtcaccacggtccgctcgctcgtgcagccgatggcgccgggcctc
ggcgaggtcgccacggtaacgctgcgcgagggcatcgaggtcgacttcgacggactgctg
gcgcagctcgtcgagatggcctacgaacgggtggacatggttggacgccgcggcgagttc
gcggtccgcggcggcatcctcgacgtcttcccgacgaccgccgaccacccggtccgcgtc
gagttctggggcgacgagatcaccgagatccgggcgttctcggtcgccgaccagcgcagc
cagcccgaggtcgacgcgtccgaggtacgcatccacccgggtcgtgaactactcctgtcc
gagaaggtgcgcacgcgcgcaagcgatctcgcggcgaagaaccccgacgacaccgcactc
accgagatgctcggcaaactggccgagggcatccccgtcgagggaatggaagcgctcatc
ccggcgctcgtcgacggcgagatgcaactcctcaccgaggtcgtccccgacgggacacgc
gtgctgatcctcgaccccgagaaggtccggacccgcgccgcggacctgtccaagaccggt
gcggagttcctcgaggcgtcgtggacggccgcggcgatgggcgcgaacgccccgatcgac
ccgcggtcaggaaccggcatcgacctgcaggccagcgcctatcgttcgctcggcgacgtg
cgcgaagcgacactacaggccaaacgcccgtggtggacgctgtcaccgctgtccaccggc
agcgggaacgaactcgaactcgacctcacccccggacccgcaccgcgcggcgacgagcgc
gagatcgcggccacgttcgcccagctccgggcgcatgtgtccgacggcaagaccgccgcg
atcgtcgtcaccggcaagggcaccgcccagcgagtcggcgagcggctgtccgaggccgag
gtgccgtacgtgatcgccgagccggggcatcgtcccgaaccgggcgaggtcacggtcttc
ggggccacgctccgcgccggaatcgtctgtgccgacgccggactcgtcgtggtcaccgag
gcggatctcaccggtacgcgcgtcgcgaacgtccgtgacggacgcaagctcccggccaag
cgccgcaaccaggtcgacccgctggcgctggccgccggcgacctcgtcgtgcacgaccag
cacggcatcggcaagttcgtcgagatgatcgaacgcaccgtctcgggtgcgcgtcgcgag
tacctggtcctcgagtacgcgtcgagcaaacgcggccagcccgccgaccggctgtacgtg
ccgatggacgcgctcgaccagttgtcccggtacgtcggtggcgagcagccgtcgctgtcc
aagctgggcgggtcggactggcagaacaccaagcgcaaggcgcgcaaggccgttcgcgag
atcgccggcgagctggtgcagctctacgccgcgcgtcatgccgccccgggccacgccttc
gggcccgacaccccgtggcagcaggagatggaagacgccttcgacttcaccgagacggtc
gatcagctgaccgtcatcgccgaggtcaagtccgacatggaacgtccggtcccgatggac
cgcgtcatcgtcggcgacgtcggttacggcaagaccgagatcgcggtgcgcgccgcgttc
aaggcggtgcaggacggcaaacaggtcgccgtcctcgtgccgacgaccattctcgcgcaa
cagcatctgcagacgttcaccgagcggatgagcggtttcccggtgcgggtacgcggactg
tcgcgcttcaccgatgccaaggaatcccgcgagatcaccgaggcgatggccaagggcgag
gtcgacatcgtcatcggcacccaccgcctcctgcagaccggtatcacgtggaaggacctc
ggcctcgtgatcgtcgacgaggagcagcgattcggcgtcgaacacaaggaacacatcaag
tcgctgcgcacccacgtcgacgtgctgaccatgtcggcgacgccgatcccgcgcaccctg
gagatgtcgatggccggcatccgcgagatgtcgacgatcctcaccccacccgaggagcgc
cacccggtgctgacctatgtcggcgcctacgcgccgaaacaggtggccgcggcgatccgt
cgtgagttgctccgcgacggccaggtcttctacgtgcacaaccgcgtctcgaccatcgac
aagacggccaaggacatcgccgcaatgatccccgaggcgagagtcgttgtcgcgcatggt
cagatgggtgaggatcagctggagcgcacggtgtcggggttctggaaccgcgagtacgac
gtgctggtctgtacgaccatcatcgagaccggtctcgacatctccaacgccaacacgctc
atcgtggaccgcgccgagaacctcggtctctcgcagctccatcagctgcgcggacgagtc
ggacgtagtcgtgaacgcggttacgcctacctgctctacagcccggaccggccgctgacc
gagaccgcctacgaccggctcgcgacgatcgcgcagaacaacgaactcggcgccggtatg
gcggtggcgctcaaggacctcgaattgcgtggcgccggaaatgttctcggcgccgaacag
tccggccacgtcgcgggcgtcggtttcgacctctacgtgcggctcgttggcgaggccgtc
gaggcgtatcgcgccgcggccgacggcaagcccgtcgagacccaggagaccggggaggtg
cggatcgacctgccggtggatgcgcacatcccggtcgaatacgtcgactcggaccgtctc
cgtctggaggcgtaccgcaagctggcgtcggccaccgacgacgccgaggtcgacgcggtg
ctcgtcgaactcaacgaccgctacggtccgccgccggtcgagacgacgcgtctggcgtcg
atcgcccgcctgcgtctgcgctgccgcgagcgcggcatcaccgagatcggactggccgga
cagggcgtcaagatctcgccgctgccgctcctcgacagcgagcaggtgcgtctccgcagg
ctctactcctcggcgaccttccgcgcgacgacgtcggtggtcacgctcccgattccgcgg
accgggggagtcggttcggcacgtctgcgcgacgacgagctcatcgagtacctcacgacg
ttcctcacgcagctcaagccggagccgaacgcttag
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