Gordonia sp. 135: GKZ92_13860
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Entry
GKZ92_13860 CDS
T06305
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
god
Gordonia sp. 135
Pathway
god03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
god00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKZ92_13860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
god03019
]
GKZ92_13860
03009 Ribosome biogenesis [BR:
god03009
]
GKZ92_13860
Enzymes [BR:
god01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GKZ92_13860
Messenger RNA biogenesis [BR:
god03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GKZ92_13860
Ribosome biogenesis [BR:
god03009
]
Prokaryotic type
rRNA processing factors
GKZ92_13860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
QGP88627
UniProt:
A0A6I5ZFR8
LinkDB
All DBs
Position
complement(3065429..3068800)
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AA seq
1123 aa
AA seq
DB search
MTDNGSPADANAAPEPVEEFPSKLRVHALARFLGLTSRQVLAHLANLGVQTRSPQSSVDR
ELAQAVAERVRANVDADEPGVTPAAAEEAAPEAAADVAATTAEPVAEEPAAQEPAPEAEA
PTADEPPSLFSAASTRYDEPVATPAAESDASYGTQPLFLQPQAPADKPKATRAAKQADKT
EQVDKPAKADDSDKPEEASSTDADSGATTQEAKAPETKVAETKIAETKAPEAETVDSDVS
DETGAENTDSSDSESGDNSDTDDSGSGRNRRRRRGRRGRGRGRGDQGGDGESGDASDDDN
TDDTDDKAEDTTPDVDSSTESGETTTDEAADDSKSDEPTSRRRRRRRSGSDTSEEADRKD
SASDDSSKGESKDDDSDDDSDDNDDESGDDSGEASSTRRRRRRRRRKGGGEPDEGSPDDP
PNTVVHEREPRSKRARDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPILTESEFLARREA
VDRVMVVRERSANSSITDSDGHDHAAVEDYTQVAVLEDGVLVEHFVTTATSSSMVGNIYL
GRVQNVLPGMEAAFVDIGRGRNGVLYAGEVNWDAAGLDGGSRKIEQALKPGDHVLVQVSK
DPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVERKRLKQILSKLVPEDAGVII
RTASEGVSAEELGADIARLEAKWKSIEESVESVKKSGSGAPKALYEEPDLLVRVVRDLFN
EDFKKLVVEGDKAWNLVEGYVSSVAPDLMERVEKFSKPHADAPDSFVVHRIDEQLAKALD
RKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDI
GGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEA
FSTPCTSCGGRGLIVHANPVEVRGDDSAKSDGAGSKRSRRGKKKSEAPAEVAAPKAAPPA
IPPHKPAAEHPLFRAMAANHHDDEHPEGEHHEGEHVEVEQAVATAAETPPETEPAQAQEP
TRADEPTKADEPTKVEEPAEAAEPAASTDGQAPAAKRRRRVVRRPAQTTTAPENVVMTAV
DAAPEAPKTTFGPVSTGEPVVAVRRRPRKRTAGRPAGPPPAES
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaacgggtcaccggctgacgcgaacgcagcgccagaaccggtggaagaattt
cccagcaaacttcgtgtgcacgcactggcccgcttcctgggcctgacgagtcggcaggtg
cttgcgcacctggccaatctcggggtgcagacacgcagcccccaatcgagcgtcgaccgt
gagttggcgcaggccgtggccgaacgggtgcgggcgaacgtcgatgcggacgagcccggc
gtgacgccggccgccgccgaggaggccgcccccgaggcggcagccgacgtagccgccacg
acggcagaaccggtcgccgaggaaccggccgcccaggagcccgcccccgaggcggaggcc
ccgacggccgacgaaccgccgagcctgttctcggccgcctcgacgcgatacgacgagccg
gttgccacgcccgccgccgagtccgacgcgtcctacggcacccagccgctgttcctgcag
ccgcaggccccggccgacaagccgaaggcaacccgcgcggccaagcaggcggacaagacc
gagcaggtcgacaagcccgcgaaggccgacgactcggacaagccggaggaagcgtcgtcc
accgacgccgattccggcgcgacgactcaggaagccaaggcacccgagacgaaggttgcc
gagacgaagattgccgagacgaaggctcccgaagcggagaccgtcgactcggatgtctcc
gacgagaccggcgcggagaacaccgacagctccgactccgagagcggtgacaactccgac
accgacgactcgggatcgggtcgtaaccgtcgtcggcgtcgcggacgtcgtggtcgcggc
cgcggtcgcggtgaccagggcggtgacggcgagtcgggcgatgcctcggacgacgacaac
accgacgacaccgacgacaaggccgaggacacgacccccgacgtcgactcctcgaccgag
tccggcgagacgacgacggacgaggctgcagacgattcgaagtcggacgagccgacttct
cgccgccgacgccgtcgtcggtcggggtcggacacctcggaggaggccgaccgcaaggac
tctgcctccgacgactcgtcgaagggcgagtcgaaggacgacgattccgatgacgactcg
gacgacaacgacgacgagtccggtgacgattcgggtgaggcgtcctcgacccgccgccgg
cgtcggcgtcgccgccgcaagggcgggggagagcccgacgagggttcgccggacgatccg
ccgaacaccgtcgtccacgagcgtgaaccccgcagcaagcgggcgcgcgacgaggtgcag
ggcatctccggttcgacgcgactcgaggccaagcgtcagcgccgccgcgacggccgcgac
gccggtcgccggcgtccgccgatcctgaccgagtcggagttcctggcccgtcgtgaggcc
gtggaccgcgtgatggtggtgcgcgagcgcagcgccaacagcagcatcaccgacagcgac
ggccacgaccatgccgcggtggaggactacacccaggtcgcggtcctcgaggacggtgtc
ctcgtcgaacacttcgtcaccacggcgacgtcgtcgtcgatggtcggcaacatctacctc
ggccgcgtccagaacgtgctgcccggcatggaggcggccttcgtcgacatcggtcgcggt
cgcaacggcgtgttgtacgccggcgaggtcaactgggacgccgccggactcgacggcggc
tcgcggaagatcgagcaggcgctcaagcccggcgaccacgtgctcgtacaggtcagcaag
gacccggtgggacacaagggtgcccgcctgaccacgcagatctcgctggccggccggtac
ctcgtctacgtgcccggcgggtcgtcgaccggtatcagccgcaagctgcccgacgtcgag
cgcaagcgtctcaagcagatcctgtcgaagctggtccccgaggacgccggcgtgatcatc
cgcaccgcctccgagggagtgagcgccgaggagctcggtgccgacatcgcccgcctcgag
gcgaagtggaagtcgatcgaggagtcggtcgagagcgtcaagaagtccggctccggcgcg
ccgaaggccctctacgaggagcccgacctgctggtccgcgtggttcgcgacctgttcaac
gaggatttcaagaagctcgtcgtcgagggcgacaaggcgtggaacctcgtcgagggctac
gtcagctcggttgcgcccgacctcatggagcgggtggagaagttcagcaagccgcatgcg
gatgccccggactcgtttgtggtccaccgcatcgacgagcagctcgcgaaggcgctcgac
cgcaaggtgtggctgccctcgggcggcacgctgatcatcgagcacaccgaggcgatgacg
gtcgttgacgtcaacaccggcaagttcaccggttcgggcggaaacctcgaggagacggtc
acccgtaacaacctcgaggcggccgaggagatcgtgcggcagatgcgtctgcgcgacatc
ggcggcatgatcatcgtcgacttcatcgacatggtcctcgagtcgaaccgggacctggtg
ctgcgtcgcctcaccgaggcgctggcgcgggaccgcacccgtcaccaggtgtccgaggtg
acctcgctcggcctggtccagatgacccgcaagcgtctcggaaccggtctgctcgaagca
ttctcgaccccgtgcacctcgtgtggcgggcgtggactcatcgtgcacgcgaatccggtc
gaggtgcgcggcgacgattcggcgaagtcggacggcgcgggctccaagcgttcgcgccgc
ggcaagaagaagtcggaggcccccgccgaggtggcggcgcccaaggcggctcctccggcg
atcccgccgcacaagcccgccgccgagcacccgttgttccgggcgatggccgcgaatcac
cacgacgacgaacatcccgagggcgagcaccacgagggtgagcacgtcgaggtcgagcag
gctgtcgcgactgccgccgagaccccgccggagacggagccagcgcaggcccaggaaccc
accagggctgacgaacccaccaaggccgacgaacccaccaaggtcgaagaacccgccgag
gccgcggaaccggccgcgtcgaccgacggccaggcgcctgcggcgaagcgtcgccgacgg
gtggtccggcgtccggcgcagacgacgaccgcaccggagaacgtggtgatgacggccgtg
gacgcggctccggaagcgcccaagaccaccttcggtcccgtctccacgggagagccggtg
gttgcggtgcgtcgacgcccacggaagcggacggcgggcaggcccgccggaccgccgccg
gcagaaagctga
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