Gordonia sp. 135: GKZ92_20040
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Entry
GKZ92_20040 CDS
T06305
Name
(GenBank) SigB/SigF/SigG family RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
god
Gordonia sp. 135
Brite
KEGG Orthology (KO) [BR:
god00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
god03021
]
GKZ92_20040
Transcription machinery [BR:
god03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GKZ92_20040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
KORA
HTH_IclR
MarR
HTH_24
HTH_23
HTH_Crp_2
DUF7343
GerE
Sigma70_ECF
MarR_2
HTH_3
HTH_AsnC-type
HTH_26
Crp
YdaS_toxin
DUF134
Motif
Other DBs
NCBI-ProteinID:
QGP89718
UniProt:
A0A6I5ZIR9
LinkDB
All DBs
Position
complement(4428521..4429327)
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AA seq
268 aa
AA seq
DB search
MATQRAEHDDYSDVLPILREIRSERDDDLRAKKRDEVIERCLPLADHVARRFSDRGEPVD
DLRQVARIGLMHAVDRFDVDRGNNFLAFAVPTVMGEVKRYFRDSTWSIRVPRRAQEASLN
IAKASEELLQSLGRSPRPSEIAEHLGLPVGEVIEGMVARSAYTASSIDAEAGSSTDGWTL
ADTLGDEDERLDIVEEFVTLQPALARLTERERTILTLRFFRSMSQSEIARQIGISQMHVS
RLLTRMLETLREEVADDEEYEEPLLKHA
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacaacgcgccgagcacgacgattacagcgacgtcctcccgatactgcgagag
attcgcagtgaacgcgacgacgacctacgtgccaagaaacgcgacgaagtgatcgagcgg
tgcctaccgctcgcggatcacgtcgcacgccggttctccgatcgtggtgaaccggttgat
gatctgcgccaggttgcgcggatcggtctcatgcatgcggtcgacagattcgatgtcgat
cgtggcaacaatttcctcgcttttgccgtcccgacggtcatgggcgaggtcaagaggtat
ttccgtgacagcacgtggtcgatcagagtgccacgtcgtgcgcaggaggcctcgctcaac
atcgcgaaggccagcgaggaactcctgcagtccctcggacggtcgccgcggccgagcgag
atcgccgagcacctcggactaccggtcggcgaggtcatcgaagggatggtcgcgcggtcc
gcatacaccgcgagttccattgacgccgaagctggttcgtccacggacggctggactctc
gcggacacgctgggcgacgaagacgagcgcctggacatagtcgaggagttcgtcacgcta
cagccggcgcttgctcgactcaccgaacgcgaacgaacgatcctcaccctgcggttcttc
cgttcgatgtcccagagtgagatcgctcgccagatcgggatctcccagatgcacgtgtcg
cggctcctcacccggatgctcgaaactctgcgtgaagaggtcgccgacgacgaggagtac
gaggagccgctgctcaagcacgcgtga
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