Galendromus occidentalis (western predatory mite): 100898706
Help
Entry
100898706 CDS
T11057
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
goe Galendromus occidentalis (western predatory mite)
Pathway
goe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
goe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100898706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
goe03041
]
100898706
Enzymes [BR:
goe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100898706
Spliceosome [BR:
goe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100898706
Complex C
U5 SnRNP specific factors
100898706
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DrmE_N
Motif
Other DBs
NCBI-GeneID:
100898706
NCBI-ProteinID:
XP_003744651
UniProt:
A0AAJ6QSS0
LinkDB
All DBs
Position
Unknown
AA seq
2140 aa
AA seq
DB search
MADKSARSLQYEYKANSNLVLQADTRLIERRARDEATGEVFSLEGKLTGTRMGDRYERSK
PTKEISEKKRKSKKKDSASLKMKAKPSVLQDSDEIAGIVYRPKTDETKQTYEVLLSFLQD
MLGDNPRDLLCGAADEVLKTLKTDRIKDSERRKELESLLGAFADERYAVLVNLCKKITDY
SENTDDVVEQQDIDDTYGVNVEFDRSDDEESGEEMVDMVVEGASDDDEAGEEGYEAKMST
LQANLENRGPKQGESKKGESLHARHIDAYWLQRRLSRTYDDPVVAQTKASEVLQILKTSA
EDRDIENHLVRLLGCDQFDFIKQLRDNRNLILYCTLLAQEQNDSQRQKLREKMKSVPELA
SILVQLDSSDIGTGKESRAKDKGKKRNLEEDDSDDEKSSKLRLSSCKLLDLEDLAFSQGS
HFMSSKRCQLPDGSLRKTHKGYEEIQVPALKPKAFDEGEKLVPIDTLPDWAQPAFDKFKS
LNRIQSRLKDAALESDQNILICAPTGAGKTNVALLCMLREIGKHINTDGTINGDSFKIVY
VAPMRSLVQEMVGSFSKRLEKYGLVVSELTGDHQLNREQINATQVIVCTPEKWDIITRKG
GDRTYTQLVRLMIFDEIHLLHDERGPVLEALVARTIRNMETTQDDVRLVGLSATLPNYKD
VATFLRVDPKKGLFYFDNSYRPVPLEQKFIGITEKKVLKRFEIMNEILYEKIVANAGKSQ
VLVFVHSRKETAKTAKAIKNLCLDKDTLSLFLREGAASTEVLRSEAEQVKNLDLKDLLPY
GFGIHHAGMSRVDRTLVEDLFADRHLQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGK
WTELGALDVLQMLGRAGRPQYDTKGEGVLMTNHSELQYYLSLLNQQLPVESQMISKLPDV
LNAEIVLGNIQTVQDAVNWLGYTYLYVRMMRAPQVYGISSDDMENDRLLEKFRANLIFTA
ATKLDKAQLIRFDRKSGNLQVTELGRIASYFYCTHETMATYNQMLKPTLSEIDLFRVFSL
SGEFRNIVIREEEKLELKKLTERVPIPIKEGVEEPVAKVNVLLQAYISQLQLERLALMSD
MVYVTQSAARLMRAIFEIVLHRGWAQLADKTLSMCKMIDKGMWQSMSPLRQFKKIPKEVI
KKLETKNFPFERLFDLNVSEIGELLRMPKMGKTIHRYIHQFPKLDLVAHIQPITRSTLKV
ELTITPDFQWDEKVHGTSEAFWILVEDVNSELILHHEYFLLKQKFAQDEHLVRFFVALFE
PVPPHYFIRVVSDRWIGSESLYPVSFRHMILPEKYAPPTELLDLQPLPISALQNKDFEAL
YDGALTSFNPIQTQAFNAIYNSDDNVFVGAPTGSGKTICAEFAILRLFSQQDEGRCVYVA
PREELATIVFKEWEKKFAKKLGKKVVMLTGETGSDLKLLTSGNIIISTPERWDILSRRWK
QRRPVQNVDLFIVDELHLIGGQEGPTIEIICSRMRYISSQLERHNIRIVALSSSLANSRD
VAQWLGAGANSTFNFHPNVRPVQLELHIQGFNMTHNASRLLAMAKPVCQGIARLSPRKPV
IVFVPSRKQSRITCIELLTYSAANSAENSFLHVPLEDLKPFLDQMTDNTLKEALQGGVAY
LHEGLSSGDREIVEQLFDSGAIQVLVASSSLCYALTLQAHLVIIMDTQYYNGKIHSYDDY
PITTVMQMIGRANRPRTDDDAKVLLLCQQSKKEYFKKFLYEPLPVESHLDHCLHDHFCAE
IVTKTIENKQDAIDQLTWTLMYRRMTQNPNYYNLQGVTHRHLSDHLSDLVETTLNDLEQS
KCIAIEDEIDVSPLNLGMIAAYYYINYTTIELFSVSLNNRTKLRGLLEIVSSAAEYESVP
VRHREESILKQLYEKLPHKLTDPKFSDPHVKTNLLLQAHLSRIQLSAELQMDTELVLKKC
IRLIQACVDVLSSNGWLTPALAAMELAQMVTQGMWNKDSYLKQLPHFGPEVISRCREAGV
ETVFDVMELEDAERDRLLQMTQAQMMDVAKFCNRYPSVEVSFEVANADSVRSGGTVNVIV
QLEREDEVTGSVLAPLFPQKREENWWLVIGEPSTNSLISIKRFNLQQKAKVKLDFVAPSS
GEHSYVLYFMSDAYMGCDQEYKFNLKVGSAKRRHSDDESD
NT seq
6423 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagtcggcgcgatccttacagtatgagtacaaggcgaattcaaatcttgtt
cttcaagctgatacacgactcatcgaacgccgagctcgggatgaggccacgggcgaggtg
ttctccctggagggcaaactcacaggcactcgcatgggagatcgttacgagcggagcaag
ccgaccaaggaaatcagtgagaagaagcggaagtcgaagaagaaggattctgcgagtctg
aaaatgaaggcaaagccatccgttttgcaagactccgatgaaatcgccggaatcgtatac
cgaccgaaaacagacgagacgaagcaaacttatgaggtcctgttgagtttcttgcaagac
atgctgggcgacaacccgcgtgatcttctctgcggcgccgcagacgaagtactgaagacc
ttgaaaacagatcgtatcaaagactctgagagacggaaagagctcgaatctctgttaggg
gccttcgcagatgagagatacgcggtgttggtaaacctctgcaagaaaataactgattac
tccgaaaacacggacgatgtcgtagagcagcaggacatcgatgatacctacggcgtgaac
gtcgaattcgacagatcggacgatgaagaatccggcgaggaaatggtcgatatggtcgtc
gagggagcgagcgacgatgatgaagcaggtgaagagggctatgaggccaaaatgtcgacg
cttcaggcgaacctcgaaaacaggggacccaaacaaggagaaagcaagaagggcgaaagt
ctccacgcgcgacacatcgacgcctactggctccagaggagactctcgaggacgtacgac
gatcccgtcgttgctcaaacaaaagcttcggaggttctccagattctcaagacgtcggca
gaggaccgagacatcgaaaaccatctcgttcgattacttggctgcgatcaattcgacttc
atcaagcagctcagagacaacagaaacttgattctgtattgcacacttctcgctcaagag
caaaacgattcccagcgtcaaaaactgcgtgagaagatgaaatcggtccccgagttggct
tctatcctcgtccagctcgactcctcggatattggaaccgggaaagagtcgagagcgaaa
gacaagggaaagaagcggaatctggaagaggacgactcggacgacgaaaaatcctccaaa
ctccgactgtcgtcttgcaaactcctcgaccttgaggatttggccttctcgcaaggatcg
catttcatgtcgagcaaacgatgccagttgccggatggttccctgcggaaaactcacaaa
ggctacgaggagattcaagttcccgccctcaaacctaaggcattcgatgagggagagaaa
ctagtgccgatcgatacgctcccagactgggctcagccggcgttcgacaagttcaaatcc
ctcaataggatacagtcacgactcaaggacgctgcgctggaatcggatcagaacattctc
atctgtgcccccacaggagctggaaaaacgaatgtagctctcctctgcatgctcagagaa
atcgggaagcacatcaacacagacggaacaatcaatggagactcgttcaagatcgtatac
gtagcacccatgcgctcactcgtacaggaaatggtgggcagcttctcgaaacgattggaa
aagtacggcttggtggtgtccgagctgacaggagatcaccaactgaaccgcgagcaaatc
aacgccacccaggttatcgtgtgcactcccgaaaaatgggatatcatcacccgaaaagga
ggcgatcgaacgtatacccaattggtacgcctgatgattttcgacgaaattcatctcctc
cacgatgagcgaggacccgttctcgaagccctagttgcaagaactatacgtaacatggaa
acgacgcaggacgacgttcgactcgttggtctctcggccacactgccgaactacaaagac
gtcgcaacattcctcagagtagatccgaagaagggcttgttctattttgacaactcgtac
cgaccggtacccttggagcagaagttcatcggaatcactgagaagaaggtcctcaaacgg
ttcgagatcatgaacgagatcctctacgagaaaatagtcgccaatgccggcaagagtcaa
gtcctcgttttcgtccattctcgaaaggaaacggcgaaaacggcaaaagccatcaagaat
ctctgtctggacaaagacactctgagtcttttcctccgagagggcgccgccagcaccgaa
gtcttgaggagcgaagccgaacaagtcaaaaatcttgacctgaaagacctgctgccgtac
ggattcggtatccatcacgccggaatgtcacgtgtggacagaactctcgtggaggacttg
ttcgccgacagacatctccaggtcctggtctcgactgccaccttggcctggggtgtgaat
ctccccgcccacacggtcatcatcaaaggaacccaagtttacaacccggagaagggcaaa
tggaccgagcttggagctctagatgtcctgcagatgttgggtcgtgccggaagaccgcag
tacgacaccaaaggagaaggagtgctgatgaccaaccactcggagctccaatactaccta
tccctcttgaaccagcagctgcccgtcgagtcgcagatgatttctaagctacccgacgtc
ctgaacgccgaaatcgtcctcggtaacattcagaccgtccaggatgccgtcaactggctc
gggtacacgtatctctacgtgcgcatgatgagagctccccaagtctacgggatctcatcg
gacgacatggagaacgaccgactcctggagaaattcagggcaaatctcatattcacggcc
gccacgaaactcgataaggcccagctgattcgcttcgatcgtaaatccggtaacttacag
gtcacggagctcggcagaatcgcctcctatttctactgcacccacgaaacgatggccacg
tacaatcagatgctgaagccgaccctgagtgaaatcgatctcttccgagtgttctcgcta
tccggcgagttccgcaacatcgtgattcgtgaagaagagaagctcgagctgaaaaaactc
accgaacgagttccaatcccaatcaaagaaggcgttgaggaacctgtcgctaaagtaaac
gtactcctgcaagcctacatctcgcaactccagctcgagcgcttggctctcatgtcggat
atggtgtacgtcacacagagtgcagcgcgtctcatgagggcgatattcgaaatcgttctg
catcggggttgggctcagttggccgacaagactctatcgatgtgcaagatgatcgataag
gggatgtggcagagcatgtcacctctgcgtcaattcaagaagatcccgaaggaggtcatc
aagaaactcgaaacgaagaatttcccgttcgagaggctcttcgacctgaacgtcagtgaa
atcggcgagctactgcgtatgccgaaaatggggaaaacaatccaccgatatatacatcag
ttcccgaaactcgatctggtggctcacatccaacccatcacgaggtccacgctgaaagta
gagctcacgataacgccagatttccaatgggacgagaaggttcacggaacttcggaagcc
ttctggatcctggtcgaggatgtcaattcggaactcatcctccatcatgagtatttcctc
ctgaaacagaaattcgctcaagacgagcacttggttcgatttttcgtagctctattcgaa
cccgtcccgccacactatttcattcgggtcgtttcggaccgatggatcggcagcgagagt
ctttatcctgtctcgttccgtcacatgattctccccgagaaatacgctccacccactgag
ctattggacctccagccgttgccgatttctgcattacaaaacaaagactttgaagctctt
tacgacggagctttgacttccttcaacccgatacaaactcaagcgttcaatgccatatac
aactcggacgacaacgttttcgtaggtgctccgaccggatcgggcaagacaatctgcgcc
gaattcgccatcctccgactcttcagccaacaagatgaaggtcgctgtgtctacgtcgca
cctcgcgaagagctcgctacgattgtcttcaaggagtgggagaagaaattcgcaaagaag
ctcggaaagaaagtcgtcatgctcaccggggaaaccgggagcgacctgaagctcctcacg
agcggcaacatcatcatctcaactcccgaacgttgggatatcctttccaggagatggaaa
cagagacgaccggttcagaacgtcgatctattcattgtcgacgagctgcacctgattgga
ggtcaggaggggccgacgatcgaaattatctgctcccgaatgcggtacatctcttcccag
ctggaacgtcacaacattcggatcgtggccctgagttcctctctggcgaattctcgcgat
gtggctcaatggctcggagcgggagcgaattccacattcaatttccatccgaacgtccga
cccgttcagctagagctccacatccagggtttcaacatgacccataacgccagtcgtctc
ctggccatggctaaacctgtttgccagggaatcgcgaggttatcgccgcggaaacctgtc
atcgttttcgtaccttcaagaaaacagtcccggatcacttgtatcgagctgctgacctat
tcggctgcgaacagcgcggaaaacagtttcttgcatgttccgctcgaggatctgaagccg
ttcctggatcagatgacggacaacacgctaaaagaagctctgcaggggggcgtggcctat
ctccacgaaggcctttcgtccggtgatcgtgaaatcgtcgagcagcttttcgactccggt
gcgatccaagtcctcgtggcgtccagctccctctgttatgccttgacactccaagcgcat
cttgtcattatcatggatacccagtactacaacggcaaaatccattcttacgatgattat
ccgatcacgaccgtcatgcagatgatcggccgagcgaaccgtccgcggaccgatgacgat
gccaaggttctgctcctctgtcagcagagcaagaaagaatatttcaagaaattcctctac
gaaccgctccccgtcgagagccatctcgaccactgtctgcacgatcatttctgtgcggag
atcgtcaccaaaaccatcgagaacaaacaggacgcgatcgatcaattgacttggaccctt
atgtaccgtagaatgactcagaatcccaactattacaacctgcaaggtgtgacccatcgg
cacctctcagaccatctgtcggacctcgttgaaacgacgctcaacgatcttgagcagagc
aaatgtatcgccatcgaagatgaaatcgatgtgtcccctttgaatttgggaatgatcgct
gcctactactacatcaattatacgaccatcgaattgttctccgtttctctgaacaatcga
accaaattaagaggtctcctggaaatcgtcagttccgcggccgaatacgaaagcgtcccg
gttcggcatcgagaggagtcgatattgaaacagctctacgagaaactacctcataaatta
acggatcccaaattttccgaccctcacgtgaaaaccaatcttctcctccaagcacatctg
tcgcggatccaactgtcggctgaactgcaaatggacacagagctcgttctgaagaagtgc
atacgactgattcaggcgtgtgttgacgttctctcctcgaacggatggctcaccccggcg
ctggcagccatggaactcgctcagatggtcacccaaggaatgtggaacaaagactcctac
ctgaaacagctgccgcatttcggcccggaggtcatcagtcggtgccgagaggccggagtc
gaaaccgttttcgacgtgatggagctcgaagacgccgagcgtgacagacttctgcagatg
acgcaagcccaaatgatggacgttgccaagttctgcaaccgctacccgagcgtcgaggtg
tcgttcgaggtcgccaacgcggattccgtccggagtggaggaacggtcaatgtgattgta
caactcgaacgcgaagacgaggtcaccggctcggtgttggcgccgctgttcccacaaaag
cgagaggagaattggtggctcgtgatcggcgagccatcgacgaactcgttgatctctatt
aaaaggttcaacctacaacaaaaagccaaagttaagctggacttcgtggctccgtcgtcg
ggagagcacagctacgtgttgtacttcatgagtgatgcctatatgggttgcgatcaggag
tataaattcaatttgaaggtcggttccgcgaaacgccgacacagcgatgacgagagcgac
tga
DBGET
integrated database retrieval system
