Galendromus occidentalis (western predatory mite): 100905739
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Entry
100905739 CDS
T11057
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
goe Galendromus occidentalis (western predatory mite)
Pathway
goe03013
Nucleocytoplasmic transport
goe03015
mRNA surveillance pathway
goe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
goe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100905739
09122 Translation
03013 Nucleocytoplasmic transport
100905739
03015 mRNA surveillance pathway
100905739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goe03019
]
100905739
03041 Spliceosome [BR:
goe03041
]
100905739
Enzymes [BR:
goe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100905739
Messenger RNA biogenesis [BR:
goe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100905739
Spliceosome [BR:
goe03041
]
Complex C
Other components
EJC/TREX
100905739
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100905739
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
100905739
NCBI-ProteinID:
XP_003747488
UniProt:
A0AAJ6W070
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADTDLLDYEDEEDQNQQIADGAEAGKEVKTPAGGYVSIHSSGFRDFLLKPELLRAIVDC
GFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTR
ELAFQISKEYERFSKYMPGVRIGVFFGGLSIQNDEKTLKSACPHIVVGTPGRILALIGSK
KLSLKNVKHFVLDECDKMLDSLDMRRDVQEIFRNTPNEKQVLMFSATLSKEVRPVCLKFM
QDPMEIYVDNEAKLTLHGLQQYYVKLKDNEKNRKLFELLDVLEFNQVVIFVKSVQRCMAL
SQLLAEQNFPAIAIHRAMTQEDRLARYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPESTDTYLHRVARAGRFGTKGLAITFVSDSEDAKTLNEVQDRFDVSISELPDEIDISSY
IETN
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaccgatcttctcgactatgaagacgaagaggaccagaaccaacagattgcg
gatggagccgaagccggcaaggaagtgaaaacacctgccggaggatacgtatcgatacac
tcatcgggattccgagatttcctcttgaaacctgaactcctgagagccattgttgattgc
ggttttgaacatccgtctgaagtgcaacatgaatgcattcctcaggcaattctgggaatg
gatatcctgtgtcaggccaagtctggcatggggaaaacagcggttttcgttttggcgaca
ttgcaacagctcgagcctgtagacggcgaggtttctgtactcgtcatgtgtcacactcgt
gagctggcgttccaaatttccaaggaatacgaaagattttcgaagtacatgcctggtgtt
cgcatcggtgtcttttttggtggattatccattcaaaacgatgagaaaaccctcaaaagc
gcatgtcctcacattgttgttggaacgccggggagaatactggctctcatcggctcgaag
aaactatcgctgaagaacgtgaagcacttcgttctagacgaatgtgacaaaatgcttgac
tcgcttgatatgcgtcgcgacgtccaagaaatattcaggaacactccgaatgagaaacag
gttctcatgttctcggcgaccttatccaaggaagttcgacccgtctgtctcaagttcatg
caggatccaatggagatctacgttgacaatgaagcgaagttgaccctgcacggtctgcag
caatactacgttaagctgaaggacaacgaaaagaatcggaaactgttcgaattgctcgat
gtgcttgaattcaatcaggtggtcatcttcgtcaagagtgttcaacgctgcatggcgttg
tcccagctattagccgagcagaatttccccgcgatcgctatacacagagcgatgacccag
gaagatcgacttgcccgttaccagcaattcaaagatttccagaagagaattctcgtcgct
accaatcttttcggtagaggcatggatatcgaaagagtcaacattgttttcaattatgat
atgcccgagagcacggacacctatcttcacagggttgctcgagctggacggttcggaaca
aagggactcgccataacattcgtctccgactccgaggacgcgaaaacccttaacgaggtt
caggatcgtttcgatgttagcatctcagaactcccggatgagatcgatatctcatcgtac
attgaaacaaactga
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