KEGG   Galendromus occidentalis (western predatory mite): 100908552
Entry
100908552         CDS       T11057                                 
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
goe  Galendromus occidentalis (western predatory mite)
Pathway
goe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:goe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100908552
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:goe03019]
    100908552
   03041 Spliceosome [BR:goe03041]
    100908552
   03009 Ribosome biogenesis [BR:goe03009]
    100908552
   03016 Transfer RNA biogenesis [BR:goe03016]
    100908552
Enzymes [BR:goe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100908552
Messenger RNA biogenesis [BR:goe03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     100908552
Spliceosome [BR:goe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    100908552
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    100908552
Ribosome biogenesis [BR:goe03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    100908552
Transfer RNA biogenesis [BR:goe03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    100908552
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk ResIII DEXQc_Suv3 Helicase_C nSTAND3 ATPase_2 AAA_22
Other DBs
NCBI-GeneID: 100908552
NCBI-ProteinID: XP_018494644
UniProt: A0AAJ7L3I5
LinkDB
Position
Unknown
AA seq 1018 aa
MDELFSVFESTGAAEKSEDGNDAPSKSSSKTTDDIVNAILQGKHKSDETEEVSRKRIKIL
QEYNPDDYATRCTIHRVETVDSCSHEVAVPSGQEFTPLEVKVGAPAREYQFVLDPFQKEA
ILCIENEQSVLVSAHTSAGKTVVAEYAIALALKNKQRVIYTTPIKALSNQKYREFYEEFK
DVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWE
ETIILLPDNVHYVFLSATIPNARQFAEWICYLHKQPCHVVYTEYRPVPLQHYIFPAGGDG
LHLVVDEKGVFKEDNFNLVMTTLQSAAGNAKGDAGLRGKKGGFRSDTNCYKIVKMIMERD
YSPVIIFSFSKRECEAYATQMSKLDLNSAEEKKLVNEVFNNAMEALSDEDRELPQVQNVL
PLLMRGIAIHHGGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVLFTNARKYD
GQSFRWVTSGEYIQMSGRAGRRGLDDRGIVILMIDEKMSSQSAKDIVKGAPDAINSAFHL
TYNMVLNLLRVEGINPEYMLERSFFQFQNYASIPQLYQRLDALQEQYDSMQVDREDEVAA
YFKVDQQLSKCKNELRSFIFKPQYVVPFLQAGRMIHVRNKEDDFGWGIVINYKNKRIQSK
QPTSILDQEDVQVIVEALIYVSPGATEAESIKPAPKGVRGEMQVVPIRLDLVEEISSVRL
LYPSDLRPLDNRMSVLKSINEVEKRFPRGIPLLDPIDDLGIKEKEAKELVKQIAALDERL
RTLPLHTEPDLQSLYKAYLAKQGVAEQVKQCKNDIKRGKSLLQMDELKCRKRVLRRLGHC
NNADIIDVKGRIACEISTADELLLTEMIFNNVFNDLNPAQCNALLSCLVFQEKSNEMPKL
TEDLMQPLRMMQDMARRIAQVAHDSKLEVNEEDYIDQFKPHLMDVVYGWSKGASFAQICK
MTDVFEGSIIRCMRRLEELLRQMVQAAKSIGNTELETKFSEAIRLIKRDIAFAASLYL
NT seq 3057 nt   +upstreamnt  +downstreamnt
atggatgagctattcagtgttttcgagagtacgggcgctgccgaaaagtctgaggacggt
aatgatgctccgtccaagtcatcctccaagacaacggacgatatcgtcaatgcgattttg
caaggcaagcataaatcggacgagaccgaggaagtatccagaaagagaattaagatcctg
caagagtacaaccccgatgactacgcgactcgctgcacgattcatcgtgtcgaaaccgtg
gactcgtgttcccacgaggttgccgtgccctcgggtcaggagttcacgcctctcgaagtc
aaagtgggcgccccagctcgagaataccagttcgtcctggatccattccaaaaggaggcg
attctgtgcatcgaaaacgagcagagcgttctcgtcagcgctcacacatccgctggaaaa
acggtagtcgcggagtacgccatcgcgttggcgttgaagaacaaacagagagtcatctat
acgactcctatcaaagcgttgtccaaccagaagtaccgtgaattctacgaagaattcaaa
gatgtcggtctgatgacaggggacgtgaccatcaatccgacggcgtcgtgtctcatcatg
acaactgaaattctccgcagtatgctttacagaggcagcgaaatcatgcgcgaggtcggt
tgggtcatattcgacgagatccactacatgcgggacaaggaacggggagtcgtttgggaa
gaaacaattatcctgctgccagacaacgtccattacgtgttcctttcggctacgatcccc
aatgcgcggcaattcgctgagtggatttgttatctccacaaacagccgtgccatgtcgtt
tataccgagtacagaccggtaccgctgcagcactacatcttccccgctggcggggacggt
ctccatctggtcgtagacgagaagggtgtcttcaaagaggacaacttcaacttggtcatg
acaactctacagagtgccgccggtaacgccaagggcgacgcaggactgaggggcaagaaa
ggcggcttccggtccgataccaactgctataagatcgtcaagatgatcatggagagagat
tacagtccggtgatcatcttcagtttctcgaagagagagtgcgaagcgtatgccacccag
atgagcaaattggacttgaattcggcggaggagaagaaattggtcaatgaagttttcaac
aatgccatggaagcattgagcgacgaagacagagagcttcctcaagtgcagaacgtcttg
ccattattgatgagagggatcgcgatccatcacggcggtttgttgccgattctcaaggaa
acgattgagattctattcagtgaaggattgataaaagcattgttcgccaccgagactttt
gccatggggctaaatatgccggcgaggacggttctcttcacgaatgcgagaaaatacgac
gggcagagcttccgttgggttacgtcaggagaatatatccagatgagtggacgagccggc
aggagaggactcgacgatcggggtatcgtcatcctgatgatcgatgagaaaatgagttcc
cagtctgccaaagacatagtgaaaggagcaccagacgccataaattctgctttccatctc
acttacaacatggtattgaacttgctgcgtgtggaaggtatcaatccggaatacatgctg
gagagaagtttcttccagtttcaaaactatgcttcgatacctcagctgtaccagcgtctg
gacgcactgcaagaacagtacgacagtatgcaggttgatcgagaggacgaagtggcggct
tacttcaaagtcgatcagcagctgagcaagtgcaagaacgaactccggagtttcatcttc
aagccccagtacgtggttccgttccttcaagctggacggatgattcacgtcaggaataaa
gaggacgatttcggatggggtatcgttattaactacaaaaacaagaggatacagagcaag
caacccacaagcattctcgaccaagaagacgtccaggtgatcgtcgaggctctgatctac
gtcagtccaggagcaacggaagcggaatccatcaaaccagcgccaaaaggagtgagggga
gagatgcaagtcgttccgatccgtctggacttggttgaagagatctcatcggtccgcctt
ctgtatccgtccgatctccgaccgcttgataacaggatgagtgtgctcaagtccattaat
gaggtcgaaaaacgattcccccgaggaattcccttactcgacccaatcgatgatcttggt
atcaaggaaaaagaagccaaagaacttgtgaagcaaatcgccgctctggatgaacggcta
cgcactttgcctctgcacacggaaccggacctgcaaagtttatacaaagcttatttggcg
aagcaaggtgtcgcggagcaggtgaagcagtgcaagaacgacattaagcggggcaaaagt
ctgctgcaaatggatgaactcaaatgccggaagagagttcttcgacgtctcgggcattgc
aacaacgcagatatcatcgatgtgaagggtcgcatcgcttgcgaaatcagcactgcggac
gaacttcttctgacagaaatgatcttcaacaacgttttcaacgatttgaatccggcccaa
tgcaacgctctcttgtcctgtctcgtttttcaggagaagagcaatgagatgccgaaatta
accgaggatctgatgcaacctctgagaatgatgcaggacatggcccgcaggatcgcccag
gtggcgcatgattcgaaactggaagtgaatgaagaggactacatcgatcagttcaaaccg
catctgatggacgtggtgtacggctggagcaagggtgcctcgttcgctcaaatctgtaag
atgacggacgttttcgaaggcagcatcattcgttgtatgcgccggctggaggagctccta
cgtcaaatggtccaagcggcgaaaagcatagggaacacggagctggaaacgaaattcagc
gaggcgatccgtctgatcaagagagatatcgccttcgcggcctcgctctatctgtaa

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