Gemmata obscuriglobus: C1280_03590
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Entry
C1280_03590 CDS
T05475
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gog
Gemmata obscuriglobus
Pathway
gog03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1280_03590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gog03400
]
C1280_03590 (mfd)
Enzymes [BR:
gog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1280_03590 (mfd)
DNA repair and recombination proteins [BR:
gog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1280_03590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
GCS2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWM36181
UniProt:
A0A2Z3GUG1
LinkDB
All DBs
Position
complement(840815..844180)
Genome browser
AA seq
1121 aa
AA seq
DB search
MTTAALAVPADADLRALPSLLHRTEGWTEMRAALAAGRSGTVDGAWGSSAALAAAALAAE
VRGTLLVVVPHPVEVEPWAEDMASFLGTRPAVFEMWESWPVSSNRGKLDPVTTSRLRLLQ
QLQRAGGAEGPPKVVVCGISAVCQPVPERADLAARGRTLAAGDIVEPSELAEWLVANGYK
RVDAVEFPGEFSRRGGICDIFPPDSPDPFRLEFFGDEVEGLRTFAAGSQRSLEKKDRVTL
LPTDQGTAGARPAKGHLADYLPPDSWVVLIEPRDLREQAKHFHERVSTTDGLHTTEQAFA
GLMKLPSVVLSALPRPSVEASVHLRVESVNRFSGSVHRVRDELDSIAHNATARVLVACQS
EAEVHRLTEVLKAGKLAESHRLRLVTGHVRSGFRLVESGVIVLGSHEIFHKDLLPPGTKA
QAKSSRTIESRAIDSFLDLNDGDYVVHVAHGIARFRGMRMLDKASGVQDTGEDSLFPDER
PANPAAEEEHLVLEFRDGIFLYVPATRIDLVQKYVGGSQAEPQLSKPGGAAWSRKKEKVS
EAVRDMAAEMINIQALRQAVPGHQFPPDSDWQKEFEAAFPYQETPDQLSAIAEVKGDLEK
TKPMDRLICGDVGYGKTEVAIRAAFKAVDSGKQVAVLVPTTVLAEQHFRTFTQRFAEYPF
MVDAVNRFKSGAKQKETLKKLAAGEVDVIVGTHRLLSKDVTFKDLGLVVIDEEQRFGVEH
KERLKHLRATVDVLTMTATPIPRTLHASLLGIREISNLETPPADRQPVETHITRWDDKQL
RNAILREMNRGGQVYFVHNRVQDIYEVATKIEILVPEAKVTVGHGQMDAHDLEKAMVRFV
RKEADILVATTIIESGLDIPNANTIFIDEADTYGLADLHQLRGRVGRSKHRAYAYFIVNP
LKLLNPTAQRRLKAIEEFTELGAGFKIAMRDLEIRGAGNILGGEQSGHIAAIGYELYCQL
LENAVRALKHQPPKVAVDVVVDLPWPSYLPRDYVQGQKLRIEVYRRLARLRDPAKLADFR
TELRDRYGEPPEPVEWLLRTTEVRLLCVKWLVASVHRHGQDIVFTYRSAERAKQFVAASR
GRLKIVDDKSVYLRLRSGDADTPAGIYKLLLGVLKPAARAE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggcggctctggcggtgccggcggacgcggatttgcgcgccctgccctccttg
ttgcaccggactgagggctggacggagatgcgcgccgccctcgccgccgggcgcagcggg
accgtcgacggggcctgggggtcgtccgcggcgctcgcggccgcggccctggcggccgaa
gtgcggggcacgctcctggtggtggtgccgcaccccgtcgaggtcgagccgtgggccgag
gacatggcctcgttcctgggcacgcgcccggccgtgttcgagatgtgggagtcgtggccg
gtgtcctccaaccgggggaagctcgacccggtcaccacgtcgcgcctgcgcctcctccag
cagctccagagagcgggcggggccgaggggccgccgaaggtggtggtgtgcgggatcagc
gccgtgtgccagccggtgcccgagcgcgccgacctcgcggcccgcggccgcacgctcgcc
gccggcgacatcgtcgagccgagcgagctcgccgagtggctcgtcgcgaacggctacaag
cgcgtggacgcggtcgagttcccgggcgagttcagccgccgcgggggcatctgcgacatc
ttcccgcccgactccccggacccgttccggctcgagttcttcggcgacgaggtggagggc
ctgcgcacgttcgcggccggctcgcagcggagcctggagaagaaggaccgggtcacgctc
ctgccgaccgaccaggggacggccggcgcgcggccggcgaagggccacctcgcggattac
ctcccgcccgactcgtgggtcgtgctgatcgagccgcgcgacctgcgcgagcaggccaag
cactttcacgagcgcgtctccaccaccgacgggctgcacaccaccgagcaggcgttcgcg
ggcctgatgaagctccccagcgtggtgctgtccgcgctgccgcggccgagcgtggaggcg
tccgttcacctgcgggtcgagtcggtgaaccggttcagcgggagcgtccaccgggtgcgg
gacgagttggattcgatcgcgcacaacgcgaccgcccgcgtgctcgtcgcctgccagagc
gaggccgaggtgcaccggctcacggaggtgctgaaggcgggcaagctcgcggagtcgcac
cggctgcggctcgtcaccgggcacgtgcgcagcgggttccggctcgtggagagcggcgtc
atcgtcctgggcagccacgagatcttccacaaggacctgctcccgcccgggacaaaggcg
caggccaagtccagccgcacgatcgagtcgcgcgcgatcgactcgttcctcgacctcaac
gacggcgactacgtcgttcacgtggcccacgggatcgcccggttccgcgggatgcggatg
ctggataaggcgagcggcgtacaggacacgggcgaggattcgctgttccccgacgagcgg
ccggcgaaccccgccgccgaggaggagcacctcgtcctggagttccgggacggcatcttc
ctgtatgtgccggcgacccggatcgacctcgtccagaagtacgtcggcgggtcgcaggcc
gagccgcaactgagcaagcccggcggcgccgcgtggagccgcaagaaggagaaggtgtcc
gaggcggtccgcgacatggcggccgagatgatcaacatccaggcgctgcgccaggccgtt
cccgggcaccagttccccccggactcggactggcagaaggagttcgaggcggcgttcccg
taccaggaaacgcccgaccagctctccgcgatcgccgaggtgaagggggacctcgagaag
accaagccgatggaccggctcatctgcggcgacgtcggctacggcaaaaccgaggtggcg
atccgcgccgcgttcaaggccgtggacagcggcaagcaggtcgccgtcctggtgcccacg
acggtgctggcggagcagcacttccgcacgttcacccagcggttcgccgagtaccccttc
atggtggacgcggtgaaccggttcaagagcggcgcgaagcagaaggagacgctcaagaag
ctcgcggccggcgaggtggacgtgatcgtcggcacgcaccggctgctctcgaaggacgtg
acgttcaaggacctgggcctcgtggtgatcgacgaggagcagcggttcggggtggagcac
aaggagcggctgaagcacctccgcgcgacggtcgacgtgctcacgatgaccgccacgccg
atcccgcgcacgctgcacgcgtcgctgctgggcatccgcgagatcagcaacctcgaaacc
ccgcccgcggaccggcagccggtcgagacgcacatcacccggtgggacgacaagcagttg
cggaacgcgatcctccgcgagatgaaccgcggcgggcaggtgtacttcgtccacaaccgc
gtgcaggacatctacgaggtcgccaccaagatcgagatcctcgtgcccgaggcgaaggtg
accgtggggcacgggcagatggacgcgcacgacctcgaaaaggcgatggtgcggttcgtc
cgcaaggaggccgacatcctggtcgcgaccaccatcatcgagagcgggctggacatcccg
aacgcgaacaccatcttcatcgacgaggccgacacctacgggctggccgacctgcaccag
ttgcggggccgggtggggcggtcgaagcaccgggcgtacgcgtacttcatcgtgaacccg
ctgaagctgttgaacccgaccgcgcagcggcgcctgaaggcgatcgaggagttcaccgag
ctgggggcggggttcaagatcgcgatgcgcgacctggagatccgcggcgcgggcaacatc
ctcgggggggagcagagcgggcacatcgcggccatcgggtacgagctgtactgccagctc
ctggagaacgcggtccgcgcgctgaagcaccagccgccgaaggtggcggtggacgtggtg
gtcgatctgccgtggccctcgtacctgccgcgcgactacgtgcaggggcagaagctgcgc
atcgaggtgtaccggcgactcgcccggctccgcgacccggcgaaactggccgacttccgc
acggaactccgggaccgctacggggagccgccggagccggtggagtggctcctgcgcacc
acggaggtccggctgctgtgcgtgaagtggctggtggcgagcgtccaccggcacggccag
gacatcgtgttcacctaccggagcgcggagcgcgcgaagcagttcgtggccgcgagccgg
gggcggctgaagatcgtggacgacaagagcgtgtacctgcggctccggtccggcgacgcg
gacacgcccgcgggcatctacaagctgctgctcggggtgctgaagccggcggcccgcgcg
gagtag
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integrated database retrieval system
