Gemmata obscuriglobus: C1280_10890
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Entry
C1280_10890 CDS
T05475
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gog
Gemmata obscuriglobus
Brite
KEGG Orthology (KO) [BR:
gog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gog03016
]
C1280_10890
Enzymes [BR:
gog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C1280_10890
Transfer RNA biogenesis [BR:
gog03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C1280_10890
Prokaryotic type
tRNA splicing ligases
C1280_10890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWM37471
UniProt:
A0A2Z3GXV3
LinkDB
All DBs
Position
2679240..2680703
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AA seq
487 aa
AA seq
DB search
MAKEGYTGPLENIGCCCHRIPKSYKPGMRVPGHIYATDKLLESIRKDQAADQVANVATLP
GIQVASIAMPDIHWGYGFCIGGVCATDPDEGGVISPGGVGYDINCGVRLVKTNLFLDDVK
HHIKELVKALFYTIPSGAGRTGKYKFDTTETRRLMGEGPKFVIARGLGVARDLDHTEANG
LIDGGDPHQVSDHAVKRGAEQCGTLGSGNHFLEVQVVDSVFDAEVAKAFGLELNQICVMI
HSGSRGLGYQVCDDALATFRNCPQKYGFELPDRQLACAPADSPEGRKYIAQMRAAANYGF
CNRQLLMHQAREVFAQVFGRSWDDLGMEQLYDVAHNIAKFEEHTVEGKKKKVWVHRKGAT
RAFPAGHPEVPEAFRAVGQPVIIPGDMGRASWVLVGSQGAMEKTFGTTCHGAGRAMSRTA
ALKDGVGRKIERELEHKGVIAMASSRNGLAEEQPKAYKNVDDVVEAVHEADLSRRVARMR
PLGVIKG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggaaggttacaccgggccgctcgagaacatcgggtgctgctgtcaccgcatc
ccgaagagctacaagcccgggatgcgcgtgcccgggcacatctacgcgaccgacaagctg
ctcgaatccatccgcaaggaccaggcggcggaccaggtcgcgaacgtcgccaccctgccc
ggcatccaggtcgcgagcatcgcgatgccggacatccactgggggtacgggttctgcatc
ggcggcgtctgcgccaccgaccccgacgagggcggcgtgatctcccccggcggggtcgga
tacgacattaactgcggcgtcagattagtaaagacgaacctgttcctggacgacgtgaag
caccacatcaaggagctggtgaaggcgctgttctacaccatcccgtccggcgcggggcgc
accgggaagtacaagttcgacaccaccgagacgcggcgcctgatgggcgaggggccgaag
ttcgtcatcgcacgtgggctgggcgtggcgcgcgacctcgatcataccgaggcgaacggg
ctgatcgacggcggcgacccgcaccaggtcagcgaccacgcggtgaagcgcggcgccgag
cagtgcggcacgttgggtagtggcaaccacttcctcgaagtgcaagtggtcgatagcgtg
ttcgatgccgaggtcgcgaaagcgttcgggctcgagttgaaccagatctgcgtgatgatc
cactccgggagccgcggtctgggctaccaggtctgtgatgacgccctcgcgacattccgc
aactgcccgcagaagtacgggttcgagctgccggaccggcagctcgcgtgcgccccggcc
gattcccccgagggccgcaagtacatcgcgcagatgcgcgccgccgccaactacgggttc
tgcaaccgccaactgctgatgcaccaggcccgcgaggtgttcgcgcaggtgttcggccgc
tcgtgggacgacctcgggatggagcagctttacgacgtggctcacaacatcgccaagttc
gaggagcacaccgtcgaggggaagaagaagaaggtgtgggtccaccgcaaaggcgcgacg
cgggcgttcccggccgggcaccccgaggtgccggaggcgttccgcgctgtggggcagccg
gtcatcatcccgggcgatatggggcgcgcctcgtgggtgctggtggggtcgcagggggcg
atggagaagaccttcggcaccacctgccacggcgcgggccgcgcgatgagccgcaccgcg
gcgctcaaggacggcgtcgggcgcaagatcgagcgcgagctggaacataagggggtgatc
gccatggcgtcgagccgcaacgggctcgcggaggagcagcccaaggcctacaagaacgtg
gacgacgtggtcgaagcggtccacgaggccgacctgtcgcgccgggtcgcccggatgcgc
ccgctgggcgtcatcaaaggctga
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