Gemmata obscuriglobus: C1280_16935
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Entry
C1280_16935 CDS
T05475
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gog
Gemmata obscuriglobus
Pathway
gog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1280_16935 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gog03021
]
C1280_16935 (rho)
03019 Messenger RNA biogenesis [BR:
gog03019
]
C1280_16935 (rho)
Transcription machinery [BR:
gog03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C1280_16935 (rho)
Messenger RNA biogenesis [BR:
gog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C1280_16935 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
S1CSD-TOTE-2
OB_RNB
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AWM38501
UniProt:
A0A2Z3H0X4
LinkDB
All DBs
Position
complement(4097569..4099500)
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AA seq
643 aa
AA seq
DB search
MSESKPDVVKPRATRGRPRKSEAPPPAPVPVPPPPAADDDGFATGIVDVVPAPVEPVVSA
PAAPVGVEPEPVKPATAAAPEPLPVEPSPPAAVPEVREPRRAERSRTERPERVERAERPE
KGEPRAERPERVERAERPEKGEQRPERVERSVRTERIERAQRVEQRPERVERPERAPERP
AELREVPRPPRAEAPVGARVDPNEQGFDAETNSRYEEIKRGNTYITELQHMTIAQLQQAA
KDERIPREEYVGLKKQDLVYRILRELTKANGLMFGEGTLEVLPDGFGFLRSPDYNYLPCP
DDIYISPSQIRRFGLRTGAVVAGQTRPPKENERYFALLRVEAINYAEPDLLTQKVVFDDL
TPLHPERRLKLETTPDELNTRVIDLVTPIGKGQRGLIVAPPRTGKTVLLQKMANSVIQNH
PECYIIVLLIDERPEEVTDMARTVKGPRVEVVSSTFDEAPERHVQVSEMVIEKAKRLVEY
GTDVVIFLDSITRLARAYNTVSPGSGKLLSGGLDATALYKPKRFFGAARNIEEGGSLTIL
ATALVDTGSKMDEVIFEEFKGTGNMEVHLERRMVDRRVYPAINVNASGTRKEELLRGEDE
LRLVHIMHRILADMNPVEAMELLLKQLGKHKTNADFLNSVTLT
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatcgaagcccgatgttgtcaagccgcgcgcgacccgcggaaggccccgcaag
agtgaggccccgccgcccgcacccgttccggtgccgcccccaccggccgcggacgacgac
ggcttcgccacgggcatcgtggacgttgtgcccgcgccggtggaaccggtggtttctgcg
cccgccgcgccggtgggcgtcgagccggaaccggtcaagcctgctactgcggccgcgccc
gagccgcttcccgtcgaaccgtcgcccccggcagccgtaccagaggtgcgcgagccgcgg
cgcgcagagcggagccgtacagaacgtcccgagcgagtggaacgcgctgagcggcccgag
aaaggcgaaccacgcgccgagcggccggaacgagttgaacgggcagagcggcccgagaaa
ggcgaacagcgccccgaacgtgtcgagcggtcggtacgcacggagcgaatcgagcgcgcg
caacgtgtcgaacaacgcccggagcgggtggaacggccagaacgtgcccccgagcggccg
gcggaactgcgcgaggtcccgcggccgccgcgtgccgaagcgcccgtcggggcgagagtc
gacccgaacgagcagggattcgatgccgagaccaactcgcgttacgaggagatcaaacgc
ggcaacacgtacattaccgaactccagcacatgaccattgcgcagctccagcaggctgcg
aaggacgagcggatcccgcgcgaggagtacgtcgggctcaagaagcaggatctggtctac
cgcatcctgcgcgagcttaccaaggccaacgggctgatgttcggtgagggcacgctggaa
gtgctgcccgacgggttcgggttcctccgcagcccggactacaactacctgccgtgcccg
gacgacatctacatttcgccgtcccagatccgtcgctttgggctgcgcaccggcgccgtg
gtcgccggccaaacgcgcccgccgaaggaaaacgagcggtacttcgcgctgctccgggta
gaggcgattaactacgccgagcccgatctactcacgcagaaggtcgtgttcgacgacctg
accccgctgcaccccgagcggcggctcaagctcgagaccacgcccgacgaactcaacacc
cgggtcatcgatctggtcacgccgatcgggaaggggcagcgcgggctgatcgtcgcgccg
ccccgcactggtaagacggtgctgctccagaaaatggccaactcggtgatccagaaccac
cccgagtgttacatcatcgtgctgctgatcgacgagcggcccgaggaagtgaccgacatg
gcccgcaccgtgaaggggccgcgggtggaggtggtgtcgagtaccttcgacgaggcgccc
gagcgacacgtccaggtgagcgagatggtcattgagaaggcgaagcgactggtcgagtac
ggcaccgacgtggtgattttcctcgactcgatcacacgcctggcccgcgcgtacaacacc
gtctcaccgggctcgggcaagctcctgtccggcggtctcgacgcgacggcgctctacaag
ccgaagcggttcttcggcgcggcccgcaacattgaagagggcggctcgctgaccatcctc
gcgacggccctcgtggacaccggctcgaaaatggacgaggtgatcttcgaggagttcaag
ggcacgggcaacatggaggtccacctggagcgccggatggtggaccgccgcgtgtacccc
gcaatcaacgtgaacgccagcggcacccggaaggaagagttgctgcgcggcgaggacgag
ttgcgcctggttcacattatgcaccgcatcctggcggacatgaaccccgtggaagcgatg
gaactgttgctcaagcaactcggtaagcacaaaacgaacgccgacttcctcaacagcgtc
actttgacgtga
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