Gemmata obscuriglobus: C1280_34470
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Entry
C1280_34470 CDS
T05475
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gog
Gemmata obscuriglobus
Pathway
gog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1280_34470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gog03019
]
C1280_34470
03400 DNA repair and recombination proteins [BR:
gog03400
]
C1280_34470
Enzymes [BR:
gog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1280_34470
Messenger RNA biogenesis [BR:
gog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1280_34470
DNA repair and recombination proteins [BR:
gog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1280_34470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
TniB
Motif
Other DBs
NCBI-ProteinID:
AWM41607
UniProt:
A0A2Z3HDE8
LinkDB
All DBs
Position
complement(8342800..8344248)
Genome browser
AA seq
482 aa
AA seq
DB search
MSALPPTVTARALQEKLRAHFGFRQFRPGQLEAVRCAMEGRDVLIVMPTGSGKSLCFQLP
ALELEGTTVVVSPLIALMKDQADALRAKGVDVAVVNSTLTAAERHRAEEDIASGRAEFVY
TTPEQLANPEFRAVLKRVPIDLFVVDEAHCVSQWGHDFRPDFLALGRAIDDLGRPPVLAL
TATATPDVIEDVLGRLGIPNADVVHTGFYRPNLTLDVIPAAGDREKCALLSKILDNTDGP
AIVYAATVKAVEAVAEYLDGEGVDVAAYHGKLPPKQRAAAQDAFMSGAVRTMVATNAFGL
GIDKPDIRAVVHYHLPGTVEAFYQEFGRAGRDGGTARCVLLYDPADQKLQRFFGRGRYPD
DTDLVNAYHTLERAPGGATLTELLAISPLPKARLKLCLDLLTGRGVARADGARYELAARG
LDRDQVARQGQAYREREERDRAKLQTLVGYAEGRACRWHTVLKYFGEGTELATPKCGHCD
RC
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctctcccgccgaccgtcaccgctcgcgccctgcaagagaagctccgtgcgcac
ttcgggttccgccagttccgccccggccagttggaagccgtgcggtgcgcgatggagggc
cgcgacgtgctcatcgtcatgcccaccggcagcggcaaaagcctgtgcttccagcttccg
gcgctcgagctggagggcacgacggtcgtcgtcagtccgctcatcgctctgatgaaggat
caggccgacgccctgcgggccaagggcgtagacgtggccgtcgtcaacagcacgctgacc
gccgccgagcggcaccgggcggaagaggacatcgcgtcgggccgggctgagttcgtgtac
accacgcccgaacaactcgccaatccggagtttcgtgcggtcctgaagcgggtgcccatc
gacctgttcgtggtggacgaggcgcactgcgtcagccagtgggggcacgacttccggccg
gacttcctcgccctcggccgggcgatcgacgacctcggccgcccgccggtgctggccctt
accgcgaccgccacgccggacgtgatcgaggacgtgctggggcggctcggcatcccgaat
gccgacgtggttcacaccggcttctaccggccgaacctgacgctcgacgtgatcccggcg
gccggcgaccgcgagaagtgcgcgctgctgagcaaaatcctggacaacaccgacggcccc
gcgatcgtgtacgcggccaccgtgaaggcggtcgaggccgttgccgagtacctggacggc
gagggggtggacgtggccgcgtaccacggcaagttgccgccgaagcagcgggccgcggcg
caggacgcgttcatgtccggggcggtgcggacgatggtggccaccaacgcgttcgggctg
gggatcgacaagcccgacatccgcgccgtcgttcactaccacctgcccggcacggtggag
gcgttctaccaggagttcggccgtgccggccgcgacggcggcaccgcgcggtgcgtgctg
ctgtacgacccggccgaccaaaagttgcagcggttcttcggccgcggccggtacccggac
gataccgacctcgtcaacgcgtaccacaccctcgagcgcgccccgggcggcgcgaccctg
accgaactgctcgcgatctcgccattgcccaaagcccgtttaaagctgtgcctcgacctg
ctgaccggccgcggcgtcgcgcgggccgacggcgcccggtacgaactcgccgcgcgcggg
ctggaccgcgaccaggtggcccgccagggtcaggcgtaccgcgagcgggaggagcgcgac
cgggccaagctgcaaaccctggtcgggtacgccgagggccgcgcctgtcgctggcacacg
gtgctgaagtacttcggcgaggggaccgaactggcaacgccgaagtgcggccactgcgac
cgctgctga
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