Gluconobacter oxydans H24: B932_0456
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Entry
B932_0456 CDS
T02348
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
goh
Gluconobacter oxydans H24
Pathway
goh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B932_0456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goh03019
]
B932_0456
03016 Transfer RNA biogenesis [BR:
goh03016
]
B932_0456
Enzymes [BR:
goh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
B932_0456
Messenger RNA biogenesis [BR:
goh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B932_0456
Transfer RNA biogenesis [BR:
goh03016
]
Prokaryotic type
tRNA degradation factors
B932_0456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
BioW
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AFW00064
LinkDB
All DBs
Position
complement(458987..461137)
Genome browser
AA seq
716 aa
AA seq
DB search
MFDYFRKEIEWAGRPLILETGKIARQADGAVMVTYGDTVVLCTAVGAKSVKPGQDFFPLT
VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNARLIDRPLRPLFPENFRNEVQVTATVLSH
DMENDPAIVSLIGCSAALTLSGIPFFGPVGAARIGRIDGKFVVNPTLSEVKDSTLDLVVA
GTSEGVLMVESEASELSEETMLEAVTLGHTSFQPVIEAIIALAEHAAKAPWDLPSLTKEE
IALRKRVEKVGNKLMADAYKERVKQARYKKVAEAKDRINEILAEEGFDVELAKPMLKELE
AQVVRGSILKTGIRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGETQALVVATLGTGQD
EQIIDALEGEYRSNFLLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRALHPLLPSKEQF
PYTMRVVSEITESNGSSSMATVCGSSLALMDAGVPLPRPVAGIAMGLIKEDRGFAVLSDI
LGDEDHLGDMDFKVAGTDQGITALQMDIKITSITPEIMQIALEQARGGRIHILGEMAKAL
TEGRDDVSGNAPKITTMSVPKEKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTITIAASN
DEQAQKAIARIEGIVAEPEIGRIYDGKVVKTADFGAFVNFLGPRDGLVHISELTQGRVAK
TSDVVQQGDAVKVKVIGFDDRGKVKLSMRVVDQETGADITESVGAKPGRPPRRDAE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgttcgattatttccgtaaggaaatcgagtgggccggacgcccgctaatcctcgaaacc
ggcaagattgcccgtcaggctgacggtgctgtcatggtcacctatggtgacacggttgtt
ctgtgtacggctgttggtgccaagagtgtcaagccgggacaggacttcttcccgctgacg
gttaactaccaggaaaaggcttacgccgctggcaagatcccgggtgggttcttcaagcgc
gaaggtcgtccgtctgaagcagaagtgctgaatgcacgtctgatcgaccgtccgctccgt
ccgctgttcccggagaacttccgtaacgaagttcaggtaacggcgaccgttctgagccac
gacatggaaaacgatccggcgatcgtctccctgatcggttgctctgctgccctgacgctt
tccggtatcccgttctttggtccggtcggtgctgcccgtatcggccgcattgatggcaag
ttcgtcgtgaatccgacgctgtccgaagttaaggacagcacgctggatctcgtcgttgct
ggtacgtctgaaggcgttctgatggttgagtccgaagccagcgagctttcggaagagacc
atgttggaagccgtgacccttggtcacacgtccttccagcctgtgattgaagccatcatt
gctctggccgagcacgcagcgaaagctccgtgggatctcccgtcgctgacgaaggaagaa
attgcacttcgcaagcgcgtcgagaaggtcggcaacaagctgatggccgatgcctacaag
gagcgtgtcaagcaggcccgctacaagaaggttgccgaagcgaaggaccgtatcaacgag
atcctggcggaagaaggttttgacgttgagctggccaagccgatgctcaaggagctggaa
gcccaggtcgttcgtggttccatcctcaagacgggtatccgtattgacggtcgcgatctg
aagacggttcgtccgatccttgcagaagttggcatcctgccgcgtgcgcatggttcgtcg
ctcttcacccgtggtgaaacgcaggcgctggtcgttgcaacgcttggcacgggccaggac
gagcagatcattgatgcgctcgaaggtgagtaccgctcgaacttcctgctgcactacaac
ttccctccgtattcggttggtgagtgtggtcgtatggggtccccaggtcgtcgtgaaatc
ggtcacggcaagctggcatggcgcgctctgcacccgcttctgccgtccaaggagcagttc
ccgtacacgatgcgggtggtctccgagatcacggagagcaacggctcctcgtccatggca
accgtctgcggttcgtccctggcgctgatggatgctggtgttccgctgccgcgtccggtg
gctggtatcgccatgggcctgatcaaggaagatcgtggttttgcagtcctgtccgacatt
ctgggtgatgaagatcatctgggtgacatggacttcaaggttgccggtacggatcagggc
atcacggcccttcagatggacatcaagatcacgtccatcacgccggaaatcatgcagatc
gccctggagcaggctcgcggtggccgtatccacatccttggcgaaatggccaaggctctg
acagaaggtcgtgatgacgtgtccggcaatgcgccgaagatcacgacgatgtccgtgccg
aaggaaaagatccgcgacgtgatcggttctggtggcaaggtcatccgtgagatcgtcgag
tattccggtgccaaggtggacatcggggatgacggcacgatcacgatcgctgcttccaat
gacgagcaggcccagaaggccattgcccgcattgagggtatcgtcgcggagccggaaatc
ggccgcatctatgacggcaaggttgtgaagacggcggacttcggtgcgttcgtgaacttc
cttgggccgcgtgatggtctggttcacatctccgaactgacgcagggccgcgtcgccaag
acgtctgacgtggttcagcagggtgatgccgtgaaggtcaaggtcatcggctttgatgac
cgcggcaaggtcaagctgtccatgcgggttgttgatcaggaaaccggtgccgatattacg
gagagcgtgggggccaagcctggtcgtccgccccgtcgcgacgccgagtga
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