Gordonia otitidis: LK459_00760
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Entry
LK459_00760 CDS
T07915
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
goi
Gordonia otitidis
Pathway
goi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK459_00760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goi03019
]
LK459_00760
03009 Ribosome biogenesis [BR:
goi03009
]
LK459_00760
Enzymes [BR:
goi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LK459_00760
Messenger RNA biogenesis [BR:
goi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK459_00760
Ribosome biogenesis [BR:
goi03009
]
Prokaryotic type
rRNA helicases
LK459_00760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrA_inter
HEM4
Cas3-like_C_2
ThylakoidFormat
CMS1
LuxC
Motif
Other DBs
NCBI-ProteinID:
UEA59478
LinkDB
All DBs
Position
complement(167310..169067)
Genome browser
AA seq
585 aa
AA seq
DB search
MTDSPTPDAPSITFDDLDIDERVRNAIADVGYETPSPIQAATIPPLMEGRDVVGLAQTGT
GKTAAFAIPILSRIDPQIRRPQALILAPTRELALQVSEAFGKYSAHMPDVRVLPIYGGQS
YGVQLAGLKRGAQIIVGTPGRVIDHLDKHTLDISQLDFLVLDEADEMLTMGFAEDVERIL
AETPDDKQVALFSATMPSAIRRLAQRYLHDAQEITVKAKTATAQNITQRYLQVSHQRKLD
ALTRFLEVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDMVQAQRERTINQLKAG
GIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRER
HLLRAIERATRQPLTEIDLPSVDDVNAQRVARFADSITENLASENLDMFRQLIENYARDN
DVAMADIAAALALETRDGGFLMAPDPPKSERPERRERAPRSGGGTFATYRIAVGRKHKVS
PGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPEDLDRDTLDRLRHTRIGKNPIDIRRD
QGPPRARGGKRNGQGGGGFNRDRHGKRGDSWGKRGNPRVAGRGRG
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacagcccgacccccgacgcaccgtcgatcaccttcgacgatctcgacatcgac
gagcgcgtacgcaacgccattgccgatgtcggctacgagaccccgtcgcccatccaggcg
gccacgattcctccgctcatggagggccgcgacgtcgtcggcctcgcccagacaggcacc
ggtaagacagcggcattcgccattcccatcctgtcgcgcatcgacccgcagatccgcagg
ccgcaggcgctgatcctcgctcccacccgcgaactcgctctgcaggtgtccgaggctttc
ggcaagtactcggcgcacatgcccgacgtgcgtgtgctgccgatctacggcggacagagt
tacggcgtgcagctcgcgggcctcaagcggggggcgcagatcatcgtcggcacccccggg
cgtgtgatcgaccacctcgacaagcacaccctcgacatctcccagctcgatttcctcgtg
ctcgacgaagccgacgagatgctgacgatgggcttcgccgaggatgtcgaacgcattctc
gccgagactcccgacgacaagcaggtggcgctgttctcggcgaccatgccgagcgcgatc
cgacgactcgcccagcgatacctgcacgacgcgcaggagatcacggtcaaggccaagacc
gcgacggcgcagaacatcacgcagcgctatctgcaggtctctcaccagcgcaaactcgac
gcgctcacgcgtttcctcgaggtcgagacgttcgacgcgatgatcgtgttcgtccggacg
aaacaagcaaccgaggaactcgcggagaaacttcgttcacgcgggttctcggcggtcgcc
atcaacggcgacatggtgcaggcgcagcgtgagaggacgatcaaccagctcaaggcggga
gggatcgacatcctcgtcgccacggacgtggccgcccgcggactcgacgtcgaccgcatc
tcccatgtcgtcaactacgacatcccgcacgacaccgagtcctatgtgcaccgcatcggg
cgcaccggtcgagcaggccgatcgggcaacgcactgctgttcgtctcgccgcgcgagcgt
cacctgctgcgcgccatcgagcgtgcgacgcgtcagccgctcaccgagatcgatctgccg
tcggtcgacgacgtgaacgcgcagcgcgtcgcgcggttcgccgactcgatcaccgagaac
ctggcgtcggagaacctcgacatgttccggcagttgatcgagaactacgcgcgtgacaac
gacgtggcgatggccgatatcgcggcagcgctggccctcgagacccgcgacggcggtttc
ctcatggcaccggacccgccgaagagtgagcggccggagcgccgggaacgggcacctcgg
tcgggtgggggcacttttgccacctatcggatcgccgtcgggcgcaaacacaaggtgtcc
ccgggcgccatcgtcggcgctatcgccaacgagggtggcctcactcggggtgacttcggc
aacatcagcatccgcgacgacttctcactcgtggagcttcctgaggatctcgaccgcgac
accttggatcgtctgcgacatacgcgaatcggcaagaatccgatcgatatccggcgcgac
caggggccgccccgtgctcgtgggggcaaacgcaatggtcagggcggtggcggcttcaac
cgcgaccgtcacggcaagcgtggtgacagctggggcaaacgcggcaatccgcgcgtggcg
gggcgcgggcgaggctga
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