Gordonia otitidis: LK459_01170
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Entry
LK459_01170 CDS
T07915
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
goi
Gordonia otitidis
Pathway
goi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK459_01170 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
goi03021
]
LK459_01170 (rho)
03019 Messenger RNA biogenesis [BR:
goi03019
]
LK459_01170 (rho)
Transcription machinery [BR:
goi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LK459_01170 (rho)
Messenger RNA biogenesis [BR:
goi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LK459_01170 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UEA59547
LinkDB
All DBs
Position
complement(258250..260271)
Genome browser
AA seq
673 aa
AA seq
DB search
MTDTDLITAPSVADDQGATKTKARAGLSGMVLTELRSLAGELGIKGTSGMRKGDLIAAIK
ERQGAGAPASDAPKAAATKAEAPKAATRASARRTKETGSAPEQMTISAEETAAPSKLAST
EGQPRPATSRDDVNSVGSAGADAGVSTTSVAAGESSSRNDRADGDRGSTDRAGGNNSGND
SSGNQSANNRNRNRNRSGGQGGSNSGGSNNSGSNNSGSNAGQQGGDTNQGGQQNSGKNQG
ASSNRDNNARDNRDDDGEGGGRGRRGRRFRERRRGRDRDGSGNGEPQISEDDVLQPVAGI
LDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAVKVPREGEQQNQRQKFN
PLVRLDSVNGMDVDAARKRPDFNKLTPLYPNQRLRLETGKEQLDTRVIDLIMPIGKGQRA
LIVSPPKAGKTTILQDIANAIATNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDR
PPSDHTSVSELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTAL
YPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEFKGTSNAELKLDRKIADRRV
FPAVDVNQSSTRKDELLMSAEEFGIMHKLRRVLSGLDSQQAIDLLISQLKKTKNNYEFLL
QVQSNTPGAMKDD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtgactgatacggacctgatcaccgcgccgagcgtcgccgacgaccaaggcgcaaccaag
accaaggcgcgcgcaggcctctccggcatggtgcttaccgaactccgttcactcgcaggt
gagctgggcatcaagggcacgtccggaatgcgcaaaggcgacctgatcgccgccatcaag
gagcgtcagggcgcaggtgcgcccgcgtcagacgctcccaaggccgcggccacgaaagcc
gaggcccccaaggccgcgacgcgcgcaagtgcacgtcgcaccaaagagaccggctcggct
cccgagcagatgacgatctccgcggaggagaccgccgcgccgtcgaagttggcgtccacc
gaaggccagccgcgccccgcgaccagcagggacgacgtgaatagcgtcggttccgcgggc
gccgacgctggcgtctcgaccacctcggtggcagcgggcgagtcgagctctcgcaacgat
cgtgctgacggcgaccgcgggagcaccgaccgagccggcggaaacaattccggcaacgac
agctccggcaaccagagcgccaacaaccgcaaccggaatcgcaaccgcagtggcggacag
ggcggctccaactcgggcggctcgaacaacagcggttccaacaacagtggttcgaatgca
ggtcagcagggtggcgacaccaaccagggtggccagcagaacagcggtaagaaccagggc
gccagcagcaaccgcgacaacaacgcccgtgacaaccgtgacgacgacggcgagggcggc
ggtcgcggtcgcaggggtcgacgcttccgtgagcgtcgccgcgggcgtgaccgcgacggt
tcgggcaatggagagccgcagatctccgaagacgacgtgttgcagcccgtcgccggcatc
ctcgacgtgctcgacaactacgcgttcgtgcgaacctccggctatctggccggaccgaac
gacgtgtacgtctcgatgaacctcgtacgcaagaacgggttgcgccgcggcgacgcgatc
accggtgcggtgaaggttccgcgcgagggtgagcagcagaaccagcggcagaagttcaat
ccgctggtgcggctcgactcggtcaacggaatggatgtcgacgccgctcgtaagcgaccc
gatttcaacaagctcaccccgctgtacccgaatcaacggctgcgcctcgagacgggcaag
gagcaactcgacacccgtgtcatcgacctcatcatgccgatcggcaaggggcagcgcgca
ttgatcgtgtccccgccgaaggccggtaagacaacgatcctgcaggacatcgccaacgcg
atcgcgaccaacaatcccgaatgccacctgatggtcgtgctcgtcgacgagcgacctgaa
gaggtcaccgacatgcaacgttcggtcaagggtgaggtcatcgcctcgaccttcgatcgg
ccgccgtcagaccacacctctgtgtccgaactcgcgatcgagcgcgccaagcggctcgtg
gagcagggcaaggacgtcgtggtgttgctcgactcgatcacccgactgggccgcgcctac
aacaatgcgtcgcccgcgtcggggcgcatcctgtccggtggtgtggattcgacagctctc
tacccgccgaagcgcttcctcggtgccgcgcgcaacatcgagaacggcggatcgctcacg
atcatcgcgtccgcgctggtcgagaccggttcgaccggtgacacggtcatcttcgaggag
ttcaagggcacgagtaacgccgagctcaaactcgaccgcaagatcgctgatcgtcgtgtc
ttcccggccgtcgatgtcaaccagtcgagcacccgcaaggacgagctgctgatgtcggcc
gaggagttcgggatcatgcacaagctgcggcgcgtcctgagtggactcgattcgcagcag
gcgatcgatctgctgatcagtcagctcaagaagaccaagaacaactacgaattcttgctg
caggtccagtcgaacaccccaggcgccatgaaggacgactga
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