Gordonia otitidis: LK459_01220
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Entry
LK459_01220 CDS
T07915
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
goi
Gordonia otitidis
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_01220
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LK459_01220
Archaeal homologous recombinant proteins
LK459_01220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_27
AAA_29
SMC_N
V-SNARE
nSTAND3
TraF_2
LUC7
AAA_22
AAA
AAA_15
Motif
Other DBs
NCBI-ProteinID:
UEA59556
LinkDB
All DBs
Position
complement(272250..275219)
Genome browser
AA seq
989 aa
AA seq
DB search
MRLHRLRMCAFGPFADDVTVDFDALAEDGLFLLHGQTGAGKTTILDAVAFALFGRVPGTR
HDAKRLHSDHASAQQVPEVELEATISGRRLRIVRSPEYHRPKKRGTGTTKVQARATLDWI
DGSGVPLTRLPEIGEVIGSLLGMSAEQFFQVVLLPQGDFSRFLRAANEDREALLQRLFDT
ERFGDVEEWLRDHARAGNAALDEKEATLGRIAAQIAALAETETPVEPDMDWAQGCLDAAR
ESHEREVLRLSSVRAELERAQDTYDRGTSLMRDRQRGLAARSKIDQLEAASAELHRAETD
LAAARRAAPVVPLMVDHRDALEALERSLARCAGSESALFGIPEAAALHGCTDGDLERAAD
TWAAESARLEPLARRVDERPTIVADIAAVEREIATATARVDDIDAALTAMPARKAGAIDA
LGAARDQRAQLEMLRGRVEKVETVDLALGQREELTQTIERAERRLHDAREAHNEARSHLL
DLRERRLTGMAAELASQLVDGEPCVVCGSSLHPAPTTASPEVRVSDVDERAASEIEQRAA
DDVAATRSSLGTYLERRANLDSIIGGASREGIAAERADAAARLATAERVAGSIDDLQREV
DDLDAQAQRLTAERGEQQSARASASTRLDALRAELTSLDDEVAQATGGRVSVAARREELA
ELCRAITSVRDDRAEVIRSRERLERTARRLAEACADAGLVDEEAVRAAMATPEQMEIWES
SLRRAHGLRSEAQATLDDDDVCAALAADPVDVDALAAAVDSARQRHDTAAGAEAVAGRRV
SGLADHVAQYWEALSAIEPVRAKQLELRELAELVSGRGQNARRMTLRSYVLAARLEEVLV
AASARLRQMSAGRYEFAHTDAGGPRGRRGGLGIEVRDEYTGATRAATTLSGGETFFASLA
LALGLADVVSAESGGRVLDTMFIDEGFGTLDPESLDLVMGVLDELRSGGRVVGVVSHVDE
LRARIPSQLQVLRGEAGSSVKVRTLAASG
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgagacttcatcgcctccgcatgtgtgcgttcggtccattcgccgacgacgtcaccgta
gacttcgacgccctcgccgaggacgggctgttcctcttgcacgggcagaccggtgcgggg
aagacgacgattctcgacgccgttgcgttcgcattgttcggtcgggtgccgggaacgcgt
cacgacgccaagcgactgcactccgatcatgcgtcggcgcaacaggttccggaggtggag
ctcgaagcgaccataagcggacgcaggctgcgcatcgtgcgatccccggagtatcaccgc
ccgaagaagcgggggacgggcaccaccaaggtgcaggccagggccaccctcgactggatc
gacgggtcaggcgtaccgctcacgcggctacccgagatcggcgaggtgatcggcagtctc
ctcggtatgagcgccgagcagttcttccaggtggtgttgctgccgcagggcgatttctcc
cggttcctgcgcgctgccaacgaggatcgagaagccctgttacaacgcctgttcgacacc
gagcgcttcggcgacgtcgaggaatggttgcgcgaccacgcgcgtgcgggcaatgcagcg
ctcgacgaaaaggaggccacgctcggtcggatcgcggcgcagattgcggcactggccgag
acggaaacgcccgtcgagcccgacatggattgggcccagggatgtctcgacgccgcacgc
gagtcacatgagcgcgaggtcctccgactgtcgtcggttcgagccgaactcgagcgagcg
caagacacatacgatcggggaacgagtctcatgcgcgaccggcagagaggactcgctgcc
cggtcgaagatcgatcaactcgaggctgcgagcgctgagctccaccgcgccgagaccgat
ctcgcggctgcacgacgcgcagctccggtggtgccgttgatggtggatcatcgtgatgct
ctcgaagcgctcgagcggtccctcgcacgctgtgccgggtcagaatcggcgttgttcgga
ataccggaagctgctgcgctgcacgggtgcacagacggcgatctcgagcgggcggccgac
acctgggcggcggaatcggcccgcctcgaaccgctggcgcgcagagttgacgaacgcccg
accatcgttgccgacatagccgccgtcgaacgggagatcgcgaccgcgactgcccgtgtg
gacgacatcgacgccgcgctgacagcgatgcccgcgcgcaaagccggtgcgatcgacgcg
ttgggtgctgctcgcgaccagcgcgcacagctcgagatgttgcgtggcagagtggagaag
gtcgagacggtcgaccttgcgctcggccagcgcgaagaactcacgcagacgatcgagcgc
gccgagcgtcgacttcacgacgcccgcgaggcgcacaacgaggctcgctcgcatctgctc
gacctccgcgagcgtcgactcaccggcatggccgcggaactggcatcacaactcgtcgac
ggcgagccgtgcgtcgtgtgtgggtcgtcgcttcatccggcgccgacgactgcaagccct
gaggttcgtgtcagcgacgtcgatgagcgcgcagcgtccgagatcgagcaacgcgcggcc
gacgacgtggcggcaacgcggtcgtcgctcggtacctatctcgagcgcagggcgaatctc
gacagcattatcggcggtgcgagccgcgaaggaatcgctgccgaacgagcagacgctgca
gcgcgtctcgcgacagccgaacgggttgcaggctctatcgacgatctgcagcgcgaggtc
gacgatctcgacgcccaagcccagcggctgaccgccgagcgaggcgaacagcagtccgcc
cgtgcgtcggcgtcgacgcggctcgacgcactgcgcgccgagctgacgtcgctcgacgac
gaggtcgcgcaggcgaccggaggtcgggtcagcgtcgccgcacggcgtgaggaactagcc
gagctgtgtcgcgccataacctcggtacgagacgaccgcgccgaggtcatccgatcacgt
gagcgtctcgagcgcacagcccgacgccttgcggaggcgtgcgcggatgccgggttggtc
gacgaagaagcggtccgcgccgctatggcgactcccgaacagatggagatctgggagtcg
tcactgcggcgcgcgcacggcttgcgcagtgaggcgcaggcaacgctggatgacgacgac
gtctgcgcagcactcgctgccgaccccgttgacgtcgatgcgctggctgcggctgttgat
agcgctcgtcaacgccatgacaccgcggcgggtgccgaggccgtggccgggcgtcgtgtg
agcggattggccgatcacgtcgcccagtactgggaggcgttgagcgccatcgagcccgtg
agagccaaacagctggagcttcgcgagctagccgaactggtcagcggtcgcggccagaat
gcgcggcgcatgacactgcgctcctacgttctcgcggcgcgcctcgaagaggtactggtg
gcagcgtcggcccgactccgtcagatgtccgcggggagatacgaattcgcgcacaccgac
gcaggcggaccacgcggtcggcgcggtggcctcggcatcgaggtacgcgacgagtacacc
ggcgcgactcgcgcggcgacaaccctgtccggcggcgagacattctttgcctcgctcgcg
ctggcactcggcctcgctgatgtggtgtccgcggaatcgggtggacgagtgctcgacacc
atgttcatcgacgagggattcggcaccctcgatccggagtcgctcgatctggtcatgggt
gtccttgacgaattacgttccggtggaagggttgtcggcgtggtcagtcacgtcgacgag
ttgcgtgcgcggataccgtcacagctgcaggtactgcgtggtgaggcgggttcgtctgtg
aaggtccgcacgctcgccgcgtcgggctga
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