Gordonia otitidis: LK459_03020
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Entry
LK459_03020 CDS
T07915
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
goi
Gordonia otitidis
Pathway
goi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LK459_03020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_03020 (mfd)
Enzymes [BR:
goi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK459_03020 (mfd)
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LK459_03020 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
AAA_22
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UEA59874
LinkDB
All DBs
Position
complement(676551..680141)
Genome browser
AA seq
1196 aa
AA seq
DB search
MSSTPALHGLASLACADTSIAALRDHRDDPQLAITAPDAARPFVVSCLSDVATSPLLVVS
ANGREADDLSAELRELLADESAVAQFPSWETLPHERLSPSAEVVGQRLEVLHRLAHPGDS
PLRVVVTTVRSLVQPMAPGLGDMRAITLREGIELDFDALLTDLVEMAYERVDMVGRRGEF
AVRGGILDVFPTTADFPVRVEFWGDEITEMRAFSVADQRSQPEVDASVVLIHPCRELLLT
PPVRERAAALAVENADDPSLVDMLTSLAEGIPVAGMEAMTPALVDGEMQLLTEVMPAGTR
VLVLDPEKVRTRAADLAQTGAEFLEASWNAAAMGASAPVDTRSMAGPTGIDLQASAYRPL
DDVEKSTLAAGRSWWTMSPLSAGFGEEYELDITPGPAPHGDDEEIRIVFAGLRAHVSAGN
TAAIVVAGKGTAARVCERLADAEVPHALRDEGARPEPGTVSVFNGTLRHGIVSPSAGLVV
VTETDLTGNRVASVRDGKRLPAKRRNQVDPLALTAGDLVVHDQHGIGKFVEMIERTVSGA
RREYLVLEYAASKRGQPGDRLYVPMDSLDQLSRYVGGEQPSLSKLGGSDWQNTKRKARKA
VREIAGELVQLYAARHAAPGYAYSPDTPWQREMEDAFDFTETVDQMTVIGEVKDDMEKPV
PMDRVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQHLQTFTERMAGFPVRI
RGLSRFTDAKESREIIKEMAQGEVDIVIGTHRLLQTGVTWKDLGLVIVDEEQRFGVEHKE
HIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYSPKQVAA
AIRRELLRDGQVFYVHNRVSTIDKTARDIAAMVPEARVAVAHGQMNEDQLERTVAGFWNR
EYDVLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVGRSRERGYAYLLYSPEK
PLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYVRLVG
EAVEAYRAAADGQPVSSTEPSEVRIDLPVDAHIPVEYVDSDRLRLEAYRKLASATSDDEV
DGVMTELTDRYGEPPEETRRLASIAKLRLVARERGVTEVGASGTSVKIAPLPLLDSEQVR
LKRLYSAASFRATTSVVTLPIPRTGGVGSARLRDDELIEYLATFLRTLKPLERVAG
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtctactcccgcccttcacggactcgcatcccttgcctgcgcggacacgagcatc
gcggcactgcgtgaccatcgcgacgacccgcaactcgcgatcacggcacccgacgctgca
cgcccgttcgtggtcagctgtctctccgacgtcgcgacctcccctcttctcgtggtgtcg
gccaacggtcgcgaggccgacgatctgagcgcagagctgcgcgaactgctcgccgacgaa
tccgcggtggcccagttcccgtcgtgggagacgcttccccatgaacgactctcgccgagt
gccgaggtcgtcggccaacgtctcgaggtcctgcaccgactcgcgcaccccggtgattcg
ccactgcgtgtggtggtcaccacggtgcgctccctcgtgcaaccgatggcgccgggactg
ggtgacatgcgcgccatcaccctgcgcgaggggatcgaactcgacttcgacgccctgctc
accgatctcgtcgagatggcatacgaacgcgtggacatggtcggtcgtcgtggcgaattc
gcggttcgcggcggcatactcgacgttttccccaccaccgcggactttcctgtgcgcgtc
gagttctggggggacgagatcaccgagatgcgcgcgttctcggtggctgatcagcgcagt
caacccgaggtcgacgcctcggttgtgctgatccacccctgccgcgagttgctgctcact
ccacccgtccgcgaacgcgcggccgcgctcgcggtcgagaacgcggacgatccctcactc
gtcgacatgctgacctcactcgcggagggcattccggtggccgggatggaggcgatgaca
cccgcgctcgtcgacggcgagatgcagttgctgaccgaggtgatgcctgcaggcacccgc
gtgctggtgctcgaccccgagaaggtgcgcacccgcgccgccgacctcgcacagaccggc
gcagagttcctcgaagcgtcgtggaacgccgccgcgatgggcgcatcggcgccggtggac
acgagatcgatggcaggcccgacggggatcgacctacaggccagcgcgtatcggcccctc
gatgacgtcgagaagtcgaccctggcggcaggccggtcatggtggacgatgagtccgctg
tccgcggggttcggcgaagaatacgaactcgacatcacgccggggcccgcgccgcacggc
gacgacgaggagatccggatcgtcttcgccggactgcgtgcacacgtgagcgcgggcaac
acagcagcgatcgtggtggcgggcaagggcaccgcggcacgcgtatgcgaacgactcgcc
gacgcggaggtaccgcacgcactccgcgacgagggcgcacgacccgagcccggcaccgtc
tctgtcttcaacggcaccctgcgccacggaatcgtcagtcccagtgctgggctcgttgtc
gtcaccgaaaccgatctcaccggcaaccgcgtcgccagtgtgcgggacggaaagcggttg
cccgccaagcgtcgtaaccaggtggatccgctggcgctcaccgcgggtgacctcgtcgtg
cacgaccagcacggcatcggcaagttcgtcgagatgatcgagcggacggtgtcgggtgcg
cgccgcgagtacctggtgctggagtacgcggcgtccaagcgcgggcaacccggcgatcgg
ctctacgtgccgatggattcgctcgatcagttgtcgcgttatgtcggtggtgaacaaccg
tcgctctcgaagctcggtggttccgactggcagaacacgaaacgtaaggcgcgcaaggcg
gttcgtgagatcgccggtgaactcgtccagctctacgccgcgcggcacgccgcccccggc
tatgcctacagccccgacaccccgtggcagcgcgagatggaggacgcgttcgacttcacc
gaaacggtcgatcagatgacggtgatcggcgaggtcaaggacgacatggagaagcccgtc
ccgatggaccgggtgatcgtcggcgacgtggggtacggcaagaccgagatcgccgttcgc
gccgcgttcaaggctgtgcaggacggcaagcaggtcgccgtcctggtgccaacgaccatt
ctcgcgcaacaacatctacaaaccttcaccgagcgcatggccgggttcccggttcgtatc
cgcggactgtcccgcttcaccgatgccaaggagtcgcgcgagatcatcaaggagatggcg
cagggtgaggtcgacatcgtcatcggcacgcaccgtctgctccagaccggcgtcacgtgg
aaagatctcggcttggtgatcgtcgacgaggaacagcgattcggtgtcgaacacaaggaa
cacatcaagtcgctgcggacacacgtcgacgtcctcaccatgtcggccacgccgataccg
cgcacgctcgagatgtcgatggcaggtatccgcgagatgtcgacaatcctcacgccgccg
gaggagcgtcaccctgtcctcacctatgtgggcgcgtattcgccgaagcaggtggctgcg
gcgatccgacgagaactgttgcgcgacggacaggtcttctacgtgcacaaccgtgtgtcg
acgatcgacaagacggcacgcgacatcgccgccatggtgcccgaggcgagagttgccgtg
gcacatggccagatgaacgaggatcaactcgaacgcaccgtcgccgggttctggaaccgc
gagtacgacgttctcgtgtgcaccacgatcatcgaaacaggcctcgacatctccaacgcc
aacacgctgatcgtcgatcgcgcggagaatctcggcctgtcgcaattgcatcagttgcgt
ggccgggtcggccgcagccgcgagcgtggttacgcatacctgctctacagtcccgaaaag
ccgctcaccgaaacggcatacgaccggctggccaccatcgcgcagaacaacgaactcggt
gcaggcatggccgtcgcactcaaggacctcgaattgcgcggcgcgggaaatgttctgggc
gccgagcagtcgggtcacgtcgccggcgtcggattcgatctgtacgtgcgactcgtcggc
gaagctgtcgaggcctaccgtgcggccgcagacgggcagcccgtctcgtcgaccgaaccc
tctgaggtgcgcatcgatcttcccgtcgatgcgcacatcccggtcgagtacgtcgattcg
gaccgactgcgactcgaggcgtaccgcaaattggcttccgccacctccgacgacgaggtc
gacggtgtgatgaccgaactcaccgatcgttacggggagccacccgaggagacccgacgc
ctggcgtcgatcgcgaagctgcgtctggtcgctcgcgaacgcggggtcaccgaggtcggc
gcgagcggcaccagcgtcaagatcgcgccgcttccgctcctcgacagcgagcaggtcaga
ctcaagcgcctgtattcggcggcgtcgttccgcgcgacgacttcggttgtcaccctaccg
atcccgaggaccggaggggtcggctcggcgcggctgcgcgacgacgaactcatcgagtac
ctcgcgacgttcctgcgcacgctcaagccgctcgagcgagtcgctgggtga
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integrated database retrieval system
