Gordonia otitidis: LK459_05565
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Entry
LK459_05565 CDS
T07915
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
goi
Gordonia otitidis
Pathway
goi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK459_05565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goi03019
]
LK459_05565
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_05565
Enzymes [BR:
goi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK459_05565
Messenger RNA biogenesis [BR:
goi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK459_05565
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LK459_05565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEA60328
LinkDB
All DBs
Position
1232762..1234963
Genome browser
AA seq
733 aa
AA seq
DB search
MTSTPLQLSDDDQAVADAVITSLAGDGARLRDDQLRAVAGLVGSTDRASGPRVPGAGSEA
SGPRVPGAGSEASGPRVLVVQATGWGKSAVYWTATAILRSHRRGPTLIVSPLLSLMRDQV
SAAQRAGLRAATLNSSNVDEWSEIEASLRSGDLDVLLVSPERLANPGFGRRVLDALAGEI
GLLVIDEAHAISDWGHDFRPDYRRVSDVLQSLNPQTPVLATTATANSRVTDDVAAQLSAG
GGQSETLVLRGPLARSSLHLNVIDGLSPIDRYGWVAQHLPELPGSGIVYVLTVADAQRLV
DAIRAVHGDSLAVEAYTGQLDADRRHHLEDALLHNQVKALVATSALGMGYDKPDLGFVVH
VGSPPSPVSYYQQVGRAGRALDDAVVMLLASHTDSSVWEYFATATIPDPAKMDTVLDALR
RSDEPMSVPSLEAATGQRRGRIELMLKQLAVDGATERGPDGWSVTGVPWTYDAAHYDGVV
EVRRREADIMRDYIAGRRCLMQLLTESLDDPQAQPCGRCSVCTGSLTPPLTADVDPAVVR
TITGELRRSAQILEPRKMWPGGDFGRRGRIADDLAAQPGRVLAHADAPEWADLLAAARDN
DRQALGDLGDAAVSTLSAWVRQSGQRPDMIMSLRLTGTNLADQLAEHLRIVGKRPGGHLP
VRQGNPPDRDAPGAVEARYWRDHLGEPPAEVAGQKVLLVVDESRSGWAITLAAAALREAG
ATAVMPLLIHRSV
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcacacccctccagctctccgacgacgaccaggctgtcgccgacgccgtgatc
accagtctcgcgggcgacggcgcccgcctacgcgacgaccagctccgcgcggttgcgggg
ttggtgggatcgaccgaccgggcgagcgggccacgagtgcccggcgccgggagcgaagcg
agcgggccgcgagtgcccggcgccgggagcgaagcgagcgggccacgtgttctggtggtg
caggcgacggggtggggaaagtcggcggtgtattggaccgcgacggcgatcctgcgatcg
catcggcgtgggccgacgctgatcgtgtcgccactgttgtccctcatgcgcgaccaggtg
tccgcagctcagcgggccgggttgcgtgcggcgacgctcaactcgtcgaacgtcgacgag
tggtcagagatcgaggcctcgctgcgctccggcgacctcgacgtgctgctcgtctcgccc
gagcgtctcgccaatcccgggttcggcaggcgggtgctcgacgcgttggccggtgagatc
gggttgctcgtcatcgacgaagcgcatgcgatctccgactggggtcacgacttccggccc
gattaccgccgggtgtccgacgtcctgcagtcactcaatccccagacgcctgttctcgcc
accactgccacggccaacagtcgggtcaccgacgacgtcgcggcgcagctgagcgcgggc
ggcgggcagtcggagacgctggtactgcgcggtccgcttgcgcgtagctcgttgcacctg
aacgtgattgacggtttgtcgccgatcgaccgatacggctgggtcgcccagcacctgccc
gagcttcccggttcggggatcgtgtacgtgctcaccgtcgccgacgcgcaacggctcgtc
gatgccatccgtgcagtgcacggcgactcactcgccgtcgaggcgtacaccgggcagctc
gacgccgaccgtcgccaccacctcgaagacgccttgctgcacaaccaggtgaaagccctg
gtggcgacctcggcgctcgggatgggatacgacaaaccggatctgggtttcgtggtgcat
gtcgggtcgccgccgtcaccggtgtcgtactaccagcaggtcgggcgtgcgggccgtgcg
ctcgacgacgccgtcgtgatgctcttggcatctcatacggacagttctgtgtgggaatac
ttcgcgaccgcgaccatccccgatccggcgaagatggacaccgtgctcgacgcactgcgc
cggtccgacgaaccgatgtcggtgccatccctggaggccgcgaccgggcagcggcgcgga
cgcatcgagctgatgctcaaacaactcgcggtcgacggcgcgaccgaacgcggccccgac
ggctggtctgtgacaggtgtgccctggacctacgacgccgcgcactacgacggggtggtc
gaggtccggcgtcgggaggccgacatcatgcgcgactacatcgcaggccgtcggtgtctg
atgcagttgctcaccgagtcgctcgacgatccgcaggcgcaaccgtgcggccggtgttcg
gtgtgcacagggagcttgacgccaccgctgaccgccgatgtcgatcctgccgtcgtgcgc
accatcaccggcgaactccgccgctccgcacagatcctcgaaccgcgaaagatgtggcct
ggcggcgatttcgggcggcgaggacgaatcgccgacgacctcgcagcccaacccggacgg
gtactggcgcatgccgatgccccggaatgggctgatctgttggcggcagcccgcgacaac
gaccggcaggcgttgggcgacctcggtgacgccgcggtgtcgacgctctcggcgtgggta
cgccagtccggacagcggccggacatgatcatgtcgctgcgtctgaccggcacgaacctg
gccgaccaactggcagagcatctgcgcatcgtcgggaagcgaccgggcggacatctaccc
gttcggcagggcaacccacccgatcgggatgcccccggcgcagtcgaggcgaggtattgg
cgcgaccatctcggcgaacctccagccgaggtcgcgggtcagaaggtgctgctcgtcgtc
gacgagtcgcggtcggggtgggcgatcaccctggccgccgcggcgctgcgcgaggcgggc
gccaccgccgtcatgccgctgctcatccaccggagcgtctga
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