Gordonia otitidis: LK459_06425
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Entry
LK459_06425 CDS
T07915
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
goi
Gordonia otitidis
Pathway
goi00521
Streptomycin biosynthesis
goi00523
Polyketide sugar unit biosynthesis
goi00525
Acarbose and validamycin biosynthesis
goi00541
Biosynthesis of various nucleotide sugars
goi01055
Biosynthesis of vancomycin group antibiotics
goi01100
Metabolic pathways
goi01110
Biosynthesis of secondary metabolites
goi01250
Biosynthesis of nucleotide sugars
Module
goi_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
LK459_06425 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
LK459_06425 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
LK459_06425 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
LK459_06425 (rfbB)
00525 Acarbose and validamycin biosynthesis
LK459_06425 (rfbB)
Enzymes [BR:
goi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
LK459_06425 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
NAD_binding_10
adh_short
NmrA
Motif
Other DBs
NCBI-ProteinID:
UEA60484
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All DBs
Position
1409079..1410083
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AA seq
334 aa
AA seq
DB search
MRVLVTGGAGFIGANFVLRTLEQRPDVQLRVLDKLTYAASPSTLAPVADSIDLVEGDIAD
AALTDRLVADADLVVHFAAESHNDNSLADPSAFVQTNLVGTYTLLEAVRRHDVRYHHIST
DEVYGDLDLDDPARFTESTPYNPSSPYSSTKAGSDLLVRAWVRSFGVPATISNCSNNYGP
YQHVEKFIPRQITNVLSGVRPKLYGDGRNVRDWIHVDDHNDAVWTIVEKGQIGETYLIGA
DGEVDNRTVVETILELLGQPRDAFDFVTDRPGHDRRYAIDSTRLRTELGWSPRYTDFRSG
LSATIDWYRDNAGWWQPAKDGVEQKYAVTKKVVG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgcgggttctggtcaccggtggagccgggttcatcggcgcaaacttcgtgctccgcaca
ctcgagcagcggcctgacgtgcagttacgcgttctggacaagctcacatacgcggctagt
ccgtcgacccttgcacccgtcgccgacagcatcgacctcgtggagggcgacatcgccgac
gcggcgctcaccgaccgtctcgtcgccgacgccgacctcgtcgtgcatttcgccgcggag
tcgcacaacgacaactcgcttgccgacccgtcggcgttcgtccagaccaacctggtgggc
acgtacaccctgctcgaggcggtgcggcgccacgacgtgcggtatcaccacatcagtacc
gacgaggtctacggcgacctcgacctcgacgacccggcgcgcttcaccgaatccaccccg
tacaacccgtcgagcccgtacagctcgaccaaagcgggcagtgacctgctggtgcgggcg
tgggtgcgctcgttcggcgtgcccgcgaccatctcgaattgctccaacaactacgggccg
tatcagcacgtcgagaagttcatcccccgccagatcaccaatgtgctctccggggtgcgc
ccgaagctgtacggcgacggacgcaacgtgcgcgactggattcacgtcgacgaccacaac
gatgccgtctggacgatcgtcgagaaggggcagatcggcgagacctacctgatcggcgcc
gacggcgaggtcgacaaccggaccgtcgtcgaaaccatcctcgaactgctcgggcagccc
cgggacgccttcgacttcgtcaccgaccggccaggacacgaccgccgatacgccatcgat
tcgacgcgcctgaggaccgaactgggctggtcaccgcgttataccgacttccggtccggc
ctgtcggcgacgatcgactggtaccgcgacaacgcaggctggtggcagccggccaaggac
ggcgtcgagcagaagtacgcggtcaccaagaaggtcgtcggctga
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