Gordonia otitidis: LK459_15005
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Entry
LK459_15005 CDS
T07915
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
goi
Gordonia otitidis
Pathway
goi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LK459_15005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
goi03021
]
LK459_15005
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_15005
Enzymes [BR:
goi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LK459_15005
Transcription machinery [BR:
goi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LK459_15005
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LK459_15005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
SUV3_C
Motif
Other DBs
NCBI-ProteinID:
UEA57906
LinkDB
All DBs
Position
3276159..3280115
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHNELSTLEAEMEVEKKAVADQREADLAERQQKLEAD
LAELEAEGAKADVRRKVRDGAEREMKRMRDAAQRELDALEELWDKFTKLAPGDLIIDEKL
YHQLQDRYGEYFTGAMGAEAIKKLLENFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLKEGAAGEYT
PATDDDIERGVYSSPAEAIMAVDRGALTVQSRIKVRLTDQRPPADIEAEQFPDGWKYGQP
WDVVTTLGRVLFNELLPVEYPFVDEQMPKKRQAAIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSMADVLVPPAKAEILERYEERADGLERKFQRGALTPDERRDALVEIWKQA
TEEVGKAMEDYYPDDNPITMIPKSGATGNMTQVRNLSGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGINVSL
GEKQPDGSIIRDAHVETSAYARTLAADAVDENGNVIVERGHDLGDPAIEALLAAGIDQVK
VRSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGVAPIAEVSGRIRLEDDDRFYKITIIPDDGSEEVVYDKIS
KRQRLRVFKHDDGSERLLADGDHVEVGQQLMEGSANPHEVLRVMGPRQVQVHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAANRQVVSEGGEPA
AGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPAG
TGINRYRNIEVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFGSDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgaactgaaaatcggtcttgcgacggccgacgatatc
cacaactggtcatacggcgaggtcaagaagcccgagaccatcaattaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggacctactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgaacgctgcggcgtc
gaggtcaccaaggccaaggtgcgtcgcgagcggatgggtcacatcgagctggccgctccg
gtcacgcacatctggtacttcaagggtgtgccgagccgtctgggctacctgctcgacctc
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcacctcggtcgac
gacgagctgcgccacaacgagctctcgaccctcgaggccgagatggaggtcgagaagaaa
gctgtcgccgaccagcgcgaagccgatctcgccgagcgtcagcagaagctcgaagccgac
ctggccgagctcgaggccgagggagccaaggccgacgtgcgccgcaaggtgcgtgacggt
gccgagcgtgagatgaagcgtatgcgcgacgccgcgcagcgtgagctcgacgctctcgaa
gagctctgggacaagttcaccaagctcgctcccggcgatctgatcatcgacgagaagctc
taccaccagctgcaggaccgctacggcgagtacttcaccggtgctatgggcgccgaggcg
atcaagaagctcctcgagaacttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgtagcggcaagggccagaagaagctgcgtgcgctcaagcgactcaaggtcgtcgcc
gcgttccagcagtcgggcaactcgccgctgggcatggtgctcgacgccgtgccggtgatc
ccgccggagctccgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcacccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggccgccgcggtcgtccggtcaccggaccgggcaaccgtccgctcaag
tcgctgtcggatctgctcaagggcaagcagggtcgattccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgtctc
gtcgacctgaaccaggcacagaacatcaagagcgccaagcgcatggtcgagcgtcagcgc
ccggccgtgtgggacgtgctcgaagaggtcatcgccgagcacccggtgttgctgaaccgt
gctccgacgctgcaccgtctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagttgcaccccctcgtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgagcgccgaggcgcaggcggaggcacgcatcctgatgctg
tcgtcgaacaacatcctgtcgcccgcgtcgggtcgtccgttggccatgccgcgtctggac
atggtgaccggtctgtactacctgaccaccctcaaggagggtgcggccggcgagtacacc
ccggcgaccgacgacgacatcgaacgtggcgtctactcgagcccggccgaggccatcatg
gccgtcgaccgcggtgcgctcaccgtgcagtcgcgcatcaaggtgcgcctgaccgatcag
cgtccgcctgccgacatcgaggccgagcagttcccggatggctggaagtacggtcagccg
tgggacgtcgtgacgacgctgggtcgcgtgctcttcaacgagctgctgcccgtggagtac
ccgttcgtcgacgagcagatgccgaagaagcgtcaggccgcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtcgttgcgcagaccgtcgacaagctcaaggacgtcggtttc
tactgggcgacccgctcgggtgtgaccgtgtcgatggccgacgtgctggtgccgccggcg
aaggcggagatcctcgagcgttacgaggagcgggccgacggtctggagcgcaagttccag
cgtggtgccctcaccccggacgagcgtcgtgacgctctggtcgagatctggaagcaggcc
accgaggaagtcggtaaggccatggaggactactaccccgacgacaacccgatcaccatg
atcccgaagtccggcgcgaccggaaacatgacgcaggtgcgcaacctgtcgggtatgaag
ggtctggtgacgaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccga
gagggtctgaccgtcgcggagtacttcatcaacacgcacggcgctcgtaagggcctggcg
gacacggcacttcgtacggcggactcgggttacctgacccgtcgtctggtcgacgtcagc
caggacgtcatcgtccgcgagaccgactgcggcaccgagcgcggcatcaacgtgtcgctc
ggcgagaagcagcccgacggttcgatcatccgcgacgcgcacgtcgagacctcggcgtac
gcccgcaccctggccgctgacgcggtcgacgagaacggcaacgtcatcgtcgaacgtggt
cacgatctgggcgatccggctatcgaggccctgctcgctgcaggcatcgaccaggtcaag
gtccgttcggtcctgacctgtgcgaccggcaccggtgtgtgcgcgatgtgctacggccgt
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggtatcatcgcggcccag
tcgatcggtgagcccggtacccagctgacgatgcgtaccttccaccagggtggtgtcggt
gacgacatcaccggtggtctgccgcgtgtccaggagctcttcgaggcgcgcgtacccaag
ggtgtcgcaccgatcgcggaggtctccggacggattcgtctcgaggacgacgaccgcttc
tacaagatcacgatcatccccgatgacggatcggaagaggttgtctacgacaagatctcg
aagcgtcagcgtctgcgtgtcttcaagcacgacgacggctccgagcgtcttctcgccgat
ggcgaccacgtcgaggtgggccagcagctcatggagggttcggcgaacccgcacgaggtt
ctccgcgtgatgggtccgcgtcaggtgcaggtgcacctggtcaacgaggtccaggaggtc
taccgcagccagggtgtgtcgatccacgacaagcacatcgagaccatcgtgcgtcagatg
ctgcgtcgcgtgacgatcatcgactcgggttcgacggagttcctgcccggctcgctcacc
gagcgcgccgagttcgaggccgcgaaccgtcaggtcgtgtccgagggtggcgagcccgct
gccggacgtccggtgctgatgggtatcaccaaggcctcgctggcgaccgagtcctggctg
tcggcggcgtcgttccaggagaccacgcgtgtcctgaccgatgcggccatcaacagccgc
agcgacaagctgatcggtctgaaggagaacgtgatcatcggtaagttgatcccggccggt
acgggtatcaaccggtaccgcaacatcgaggtccagccgaccgaggaggcccgcgcggcc
gcctacgcggtgccgtcctacgacgacacctactacagcccggacggcaccttcggtgct
ccggccggcgctgcggttccgctcgacgactacgggttcggcagcgactaccgctga
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integrated database retrieval system
