Gordonia otitidis: LK459_16960
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Entry
LK459_16960 CDS
T07915
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
goi
Gordonia otitidis
Pathway
goi03420
Nucleotide excision repair
goi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LK459_16960
03430 Mismatch repair
LK459_16960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_16960
Enzymes [BR:
goi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK459_16960
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LK459_16960
MMR (mismatch excision repair)
Other MMR factors
LK459_16960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UEA58263
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All DBs
Position
3722179..3725694
Genome browser
AA seq
1171 aa
AA seq
DB search
MTDPDISRTRVSATSLAAALGLPTPTAEQVAVIEAPLEPLLVVAGAGAGKTETMASRVVW
LVANGLVAPDEILGLTFTRKAASELGVRIRRRLSMLAGSPALVNWDPDGVLAARLRSADP
EVSTYHAYAGRLIADYGLLLPVEPSSTLLSETELWQLAFSIVSTWTGPLHTTKVPSGVTE
AVLRLHGEMAEHLVELDTVTAWGDDLRSMVDTLPPGPRQHATPSRDLVRIQEVIDERREL
LPMVAALRAAMREQSALDFGSQMSLAAQLVQRNPEVAAAERRMFRAVLLDEYQDTGHSQR
ILLSTLFGGGFRATAGSTAKNSSGAQSPTVAVTAVGDPIQSIYGWRGASAANLPRFSADF
PRGDGRPSQRLELLTSWRNPSHTLDLANRTSEELRRRGIPVSVLRPRPDAPAGTVSMALT
DTVVDERAWVADHIERHYRDAERAGTDPPTVAILVRRNEDSAPLAAELESRGIPAEVIGI
GGLLHVPEIEDVVATLRLMADPMAGTAAMRLLTGARWQLGAADIAALWRRATNLAAEDFA
ASGGTVTSREELDAALDAVLPTEVVDRAGIADALVDPGDADAYSPQGYARIRSFGAQLEA
LRRRIGQPLPELVADVENTIGVGIEAQIRARRMRGAITGREHLDAFAEYVTAYAERQGAN
LPGLLAFLDTAETIEKGLEPGRIEVAEQRVQILTVHAAKGLEWDVVALPHLAARIFPGGR
ADTTWMRSAKELPGPLRGDLAERGTGEGFPTFDISGAITNRKELAEALTLHKEAIDERRL
EEDRRLLYVALTRARQDLLVSAHHWGETGDKPRGGSEFFDELVAIVSDAVDDPAVDSDGL
AIDQLAPPPDDGATNPLAEQVVRAQWPADRLGGRREGVDAAARVVLDAIAARDAPALFDT
PGGEVSGMRTAEQPTRAGDGAADNDPPADEGEHPEIAAWRAEVDALLAEHNRGNQAVVDV
ALPTHLSVSQLVELDSDEREFARRLRRPTPFRPNPTARRGTAFHAWVERWFGATRLLDID
ELPGAADSSASPDADLDALREAFLASPWASRTPSEVEVPFETVIGDTVIRGRIDAVFAEP
DGSWVVVDWKTGAVPGSRGDGSPKAAPTGAQRESVDIQLAAYRLAWAQLAGVPVDRVRAA
FHYVRHNYTLEPDVLPDHDDLRALLARESEH
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccccgacatctcgcgcacacgcgtctcggcgacctcgctggccgctgcgctc
ggactgcccacgccgaccgccgaacaggtcgctgtcatcgaggctccgctcgagccgttg
ctcgtggtcgcgggtgcgggtgcgggcaagaccgagaccatggcgtcgcgggtcgtctgg
ctcgtcgccaacggcctcgtcgcgcctgacgagatcctgggactgacgttcacacggaag
gcggccagtgaactcggggtgcgcatccggcgtcgtctgtcgatgctggcgggctcgccc
gcgctggtcaactgggaccccgacggcgtgctggctgcccggctgcgctccgccgatccc
gaggtgagcacctatcacgcgtacgcgggacgactcatcgccgactacggcttgctgctg
cccgtcgagccgagttcgacactgctgagcgagaccgaactgtggcagctggcgttctcc
atcgtgtccacgtggacgggaccgctgcacaccaccaaggtgccctccggcgtgaccgaa
gccgtactgcggctgcacggcgagatggcggagcacctcgtcgagctggacacagtgacc
gcgtggggcgacgacctgcggtcgatggtcgacacgctgccgccggggccacggcagcac
gcaacgccgagcagggatctcgtcaggatccaggaggtcatcgacgagcgtcgcgaactg
ctgccgatggtggcggcgttgcgggcggcgatgcgcgaacagtcggcgctcgacttcggc
agtcagatgtcactggctgcgcaactggtgcaacgcaatccggaggtcgccgcggcagag
cggcggatgttccgtgccgtgttgctcgacgagtaccaggacaccgggcattcgcagcgg
attctgttgagcacactgttcggtggaggtttccgcgcgacagcgggatcgacagcgaag
aactcgagcggtgcgcagagcccgaccgtcgcggtcacggcggtcggtgacccgatccag
tccatctacggctggcgtggggcgtcggcggccaacctgccacgattcagcgccgacttc
ccgcgcggcgacggtcgaccgtcacagcgactcgagttgctgaccagctggcgcaatccg
tcccacaccctcgacctggcgaaccgtacgtcggaggagttgcggcgcagagggattccg
gtcagtgtgctccgcccgcgacccgatgccccggcaggcaccgtgtcgatggccctcacc
gacaccgtcgtcgacgaacgggcatgggtcgccgaccacatcgagcgccactaccgcgac
gccgagcgagccggcaccgatccgccgaccgtcgcgatcctggtgcgacgcaacgaggat
tcggcgccgttggcggcagaactcgagagtcggggcatcccggccgaggtgatcggcatc
ggcggtctgctccacgtacccgagatcgaggacgtcgtcgccaccctgcggttgatggcc
gacccgatggcggggacggccgcgatgcgcctcctgacgggcgcgcggtggcaattgggt
gcagccgacatcgccgcgctctggcggcgagccaccaacctcgcagccgaggacttcgcg
gcgtcgggtggcacggtcaccagtcgtgaagaactcgacgcggcactcgacgccgtgctg
ccgaccgaggtcgtcgaccgtgccggcatagccgacgcgctcgtcgacccgggcgatgcc
gacgcctattcaccgcagggctatgcgcgcatccgttctttcggtgcacagctcgaagcg
ctgcgccgacgtatcgggcagccgctaccggagctggtcgccgacgtcgagaacacgatc
ggcgtcggtatcgaggcgcagatccgcgcacgtcgcatgcgcggcgccatcacgggtcgc
gagcatctcgacgcattcgccgagtacgtcaccgcgtacgcggagcggcaaggcgcgaat
ctgccgggactcctggcttttctggacacggccgagaccatcgagaagggcctcgagccc
ggccgcatagaggtcgccgaacaacgcgtgcagatcctcaccgtgcacgcggcgaaggga
ctcgagtgggacgttgtcgcgctgccgcatctcgccgcgcggatcttccccggcgggcgt
gccgacacgacgtggatgcgcagcgccaaggaactccccgggccgctgcggggcgacctg
gcggagcgcggcacgggggagggattcccgactttcgacatcagcggtgcgatcaccaac
cgcaaagaactcgccgaggcgctcacgctgcacaaggaggccatcgacgagcgtcggctc
gaggaagatcgtcgtctgctctacgtcgcgctgacgcgcgcacgccaagatctgctcgtg
tccgctcaccactggggtgagaccggcgacaaaccgcgcggcggatcggagttcttcgac
gagctggtcgccatcgtctccgacgctgtcgacgatcccgccgtcgattccgacggcctc
gcgatcgaccaactcgcgccgccacctgacgacggtgcgacgaatccgttggccgagcag
gtcgtacgtgcgcagtggcccgcggatcgcctcggcggtcggcgcgaaggggtcgacgcc
gcggcgcgggtcgtgctcgatgcgatcgcggccagagatgccccggcactgttcgacacc
ccgggcggcgaggtgtccggcatgcgaacggcggagcaaccgactcgcgcgggcgacggc
gctgcggacaacgatccaccggcggacgagggtgagcaccccgagatcgccgcatggcgt
gccgaggtggatgcgctgctcgccgagcacaatcggggtaaccaggctgtcgtcgacgtc
gcgttgccgacgcacctgtcggtcagccagctcgtcgaactcgattccgacgaaagggaa
ttcgcccgacgactgcgccgcccgacgccgttccggcccaatccgacggcgcggcgtggc
acggcgtttcacgcctgggtggagcggtggttcggtgcgacccgactgctcgacatcgat
gaactcccgggcgccgccgattcctcggcgtcacccgacgccgacctcgatgcgctgcgc
gaggcgttcctcgcgtcgccatgggcctcgcgtactcccagcgaggtggaggtcccgttc
gagaccgtcatcggcgacacggtgatccgtggccgtatcgatgcggtgttcgcggagccc
gacggttcgtgggtcgtcgtcgattggaagaccggtgcggtgcccggctctcggggcgac
ggatcgccgaaggccgcccccacgggtgcgcagcgtgagtccgtcgacatccagctcgcc
gcgtatcgactcgcatgggcacagctcgcgggtgtcccggtggaccgggtcagagctgcc
ttccactacgttcggcacaactacacgctcgaacccgacgtgttgcccgaccacgacgac
ctccgcgcgctgctcgcgcgagagtcggagcactga
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