Gordonia otitidis: LK459_19945
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Entry
LK459_19945 CDS
T07915
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
goi
Gordonia otitidis
Pathway
goi03030
DNA replication
goi03410
Base excision repair
goi03420
Nucleotide excision repair
goi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK459_19945 (polA)
03410 Base excision repair
LK459_19945 (polA)
03420 Nucleotide excision repair
LK459_19945 (polA)
03440 Homologous recombination
LK459_19945 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goi03032
]
LK459_19945 (polA)
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_19945 (polA)
Enzymes [BR:
goi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LK459_19945 (polA)
DNA replication proteins [BR:
goi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LK459_19945 (polA)
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LK459_19945 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LK459_19945 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
DNA_pol_lambd_f
HHH_2
HHH_5
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
UEA61697
LinkDB
All DBs
Position
4353138..4355825
Genome browser
AA seq
895 aa
AA seq
DB search
MLLDGHSLAYRAFFALPAENFKTATGQTTNAVYGFTSMLINLLRDEEPTHVAAAFDVSRK
TFRSEMFPEYKAQRSKSPDEFNGQVELTKEVLDALGIPVMAIEGYEADDIIATLATQAEA
EGYKVLVVTGDRDSLQLVDDSVTVLYPRKGVSDLTRFTPEEVEKKYGLTPTQYPDYAALR
GDPSDNLPGIPGVGEKTASKWIREYGSLAELIDHVDEVKGKVGDALRAHLASVQTNRQLT
ELVRDMDLPATPDDLAMVGWDRDRIHQLFDDLEFRVLRDRLFSTLSSVEPEAESGFELDG
SILGEGEVREWLDAHARTGRSGLTVTAPHQVVGADVTGVAIAAADGTSGYVDVTTLGPDD
EKALGEWFADATIEKALHETKWAIHALRSRGWSLAGVTSDTALAAYLVRPGQRTFNLDDL
ALRYLRRELRADDGADSGQLSLLDDDGGAAKVAEQAMLEARAVAELADTLDTELDRIDSK
PLLTDMELPLLFVLADLEAAGIAVDVEHFGELEETFSERIRAAAESAYAVIGEQINLGSP
KQLQTVLFDKLDMPKTKKTKTGYTTDADALQTLYEKTEHPFLAYLLEHRDATRLKVTVDG
LLKSVADDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTEAGREIRHGFVVGYDNGPGGS
GEPYETLMTADYSQIEMRIMAHLSGDAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTTEMR
HRVKAMSYGLAYGLSAFGLAAQLRISREEAKEQMEAYFDRFGGVRDYLHDVVLEARRNEY
TATLFGRRRYLPDLNSDNWQRRQAAERMALNAPIQGTAADIIKVAMINVHKRLVAENLAS
RMLLQVHDELVVEVAQGEREQAEKVVREEMGSAIDLSVPLEVSVGFGRSWDDAAH
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgctgctcgacggacattcgctggcctaccgtgcgttcttcgcgctgcccgccgagaac
ttcaagactgcgaccgggcagaccaccaacgcggtctacggcttcacgtccatgctgatc
aatctgctgcgtgacgaagagcccacccacgtggcggcggcgttcgacgtatctcgtaag
acgttccgctcggagatgttccccgagtacaaggcgcagcgatcgaagtcaccggacgag
ttcaacgggcaggtcgagttgaccaaggaggtgctcgacgcactcggaatccctgtcatg
gcgatcgagggttacgaggccgacgacatcatcgcgacgctcgccacgcaggccgaggcg
gagggctacaaagtgctcgtcgtcaccggcgaccgcgactcgttgcaactcgtcgacgac
tcggtgacggttctctacccgcgtaagggtgtgtccgacctgacccgcttcacgcctgag
gaggtcgagaagaagtacggcctgacgcccacccagtatcccgactacgccgcactgcgc
ggcgacccgagcgacaatctgcccggtatccccggggtgggggagaagacggcatcgaag
tggattcgcgagtacggctcccttgcggagttgatcgaccacgtcgatgaggtcaagggc
aaggtcggcgatgccctgcgtgcgcacctggcatcggtgcagaccaatcgccagctcacc
gagctcgtccgcgacatggatctgcccgcgacccctgacgatctcgccatggtcggctgg
gaccgcgaccgaatccatcaactcttcgacgacctcgagttccgcgtcctgcgcgaccgt
ctgttctcgacgctcagttccgttgagccggaagcggagtcaggattcgaactcgacgga
tcgatcctcggcgagggcgaggtccgcgagtggctcgacgcacacgcgcgtaccgggcgc
agcggactcaccgtgacggcgccgcatcaggtcgtcggcgcagacgtgacaggcgtcgcg
atcgcggcggccgatggcacctccggctacgtcgatgtgaccaccctgggacccgacgac
gagaaggcgctcggcgagtggttcgcagacgccacgatcgagaaggcactgcacgagacg
aaatgggcgatccatgcactgcgatcgcgtggctggtccctcgcgggcgtcaccagcgac
acagcgctggccgcgtacctcgtccggccgggccagcgaaccttcaatctcgacgacctc
gcgctgcgctacctgcggcgtgaactgcgcgccgacgacggtgccgactcgggtcagctc
tcgcttctcgacgacgacggaggtgcggcgaaggtcgcggagcaggcgatgctcgaggcc
cgcgcagtcgccgaactggccgacacactcgacaccgagctcgatcgcatcgactccaag
ccgttgctcaccgacatggagctgccgctgctgttcgtgctcgccgatctcgaggccgcg
ggcatcgcggtcgacgtcgagcatttcggcgagctcgaggagacgttctccgagcgcatc
cgtgcggccgcggagtccgcatacgcggtgatcggtgagcagatcaacctcggctcgccc
aagcaactgcagacggtgttgttcgacaagctcgacatgcccaagacgaagaagaccaaa
accggctacaccaccgacgctgacgcactgcagacgctctacgagaagaccgaacatccc
ttcctcgcctatctgctcgagcaccgtgacgcgacccgactgaaggtgaccgtcgacggc
ctgttgaagtcggtcgccgacgacggccgaatccacacgacgttcaaccagaccgtcgcc
gccacagggcgactgtcgtcgacggagcccaacctgcagaacataccggtgcgcaccgag
gcgggacgggagatccggcacggcttcgtcgtcggatacgacaacggtcccggcggatcg
ggcgagccgtacgaaactctgatgaccgccgactacagccagatcgagatgcgcatcatg
gcgcatctctccggtgatgcaggcctgatcgaggcgttcaacaccggcgaggacctgcac
aatttcgtcgggtcgcgtgccttcggtgtgccgatcgacgaggtgaccaccgagatgcgt
catcgggtgaaggcgatgtcatatggtctcgcgtacggactgtcggcgttcggtctcgcg
gcacagctgcggatcagtcgcgaggaggccaaagaacagatggaggcctacttcgaccgg
ttcggtggcgtgcgtgactatctgcacgacgtcgtgctcgaagcgcgtcgaaacgagtac
accgcaacgcttttcggtcgacgacgctatctccccgacctcaacagcgacaactggcaa
cgtcggcaggcggcggagcggatggcactcaacgccccgatccagggcacggcggccgac
atcatcaaggtcgcgatgatcaacgtccacaagcgactcgtcgccgagaatctcgcgtcc
cgcatgttgctacaggtgcacgacgagctcgtcgtcgaagtggcgcagggcgaacgtgag
caggcggagaaggtcgtccgcgaggagatgggcagtgcgatcgatctgtccgtgccgctc
gaggtgtcggtggggttcggacgttcgtgggacgacgccgcgcactga
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