KEGG   Gordonia otitidis: LK459_20010
Entry
LK459_20010       CDS       T07915                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
goi  Gordonia otitidis
Pathway
goi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:goi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LK459_20010 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:goi03400]
    LK459_20010 (uvrB)
DNA repair and recombination proteins [BR:goi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LK459_20010 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LK459_20010 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII DEAD UVR AAA_22 AAA_19 AAA_5 AAA_16 AIG1 DUF4167 UB2H DUF87 NAT10_TcmA_helicase DUF8394
Other DBs
NCBI-ProteinID: UEA58796
LinkDB
Position
4368727..4370889
AA seq 720 aa
MAFATEHPILAHSEHRPVGDIERTEGRFEVVSEYEPAGDQPQAIDDLERRIGAGEKDIVL
LGATGTGKSATTAWLIERVQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQ
PEAYIAQTDTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDR
SVEVEVGDEIDRDALLRLLVDVQYTRNDMSFTRGSFRVRGDTVEIIPSYEELAVRIEFFG
DEVEALYYLHPLTGDVVRQVDSLRIFPATHYVAGPERMEKAMSSIEEELEARLADLEGKG
KLLEAQRLRMRTTYDLEMMRQVGFCSGIENYSRHIDGRPAGSAPATLIDYFPDDFLLVID
ESHVTVPQIGGMYEGDMSRKRNLVDYGFRLPSAVDNRPLTWDEFVGRIGQTVYLSATPGA
YELGQSNGEFVEQVIRPTGLVDPQIVVKPTKGQIDDLVHEIRDRTDREERVLVTTLTKKM
AEDLTDYLLELGIRVRYLHSEVDTLRRVELLRQLRSGEYDVLVGINLLREGLDLPEVSLV
AILDADKEGFLRSTTSLIQTVGRAARNVSGEVHMYADTITDSMRNAIDETERRREKQVAY
NKEHGIDPKPLRKKIADILDQVYREAEDSAVDVGGSGRNASRGRRAQGEVSKAKGASAGV
IEKRDVSSMPRAELADLVAQLTEQMMSAARDLQFELAGRLRDEIADLKKEMRGMDAAGIK
NT seq 2163 nt   +upstreamnt  +downstreamnt
atggcttttgctaccgaacacccgattctcgcgcactcagagcaccgccccgtcggtgat
atcgaacgtaccgagggacggttcgaggtcgtcagcgagtacgaacccgcgggcgaccag
ccgcaggcgatcgacgacctcgagcgtcgcatcggggcaggcgagaaggacatcgtgttg
ctcggagcgacgggtaccggtaagtcggccaccacagcctggctcatcgaacgcgtccaa
cggccgacgctggtgatggcgccgaacaagacgctcgcggcccagctcgccaacgaactg
cgagagatgttgccgcacaacgcagtcgaatacttcgtgtcctactacgactactaccag
ccggaagcgtacatcgcgcaaaccgacacgtacatcgagaaggactcgtcgatcaacgac
gatgtcgaacgtctgcgtcactcggcgacgtcgagtctgctctcccgccgagatgtggtg
gtggtcgcgtccgtctcgtgtatctacggtctcggcacaccgcagtcgtacctcgaccgg
tcggtcgaggtcgaggtgggcgacgagatcgaccgcgacgcgttgttgcggctactcgtc
gacgtccagtacacccgcaacgacatgtcgttcacccgtggcagtttccgcgtgcgcggc
gacaccgtcgagatcatcccgtcctatgaagaactggctgtacgcatcgagttctttggt
gacgaggtggaggccctgtactacctgcaccccttgaccggcgacgtggtccgacaggtc
gactccctgcgcatcttccccgccacgcactacgtcgccggcccggagcgcatggagaag
gcgatgtcgagcatcgaggaggaactcgaagccaggctcgccgacctcgagggcaagggc
aaactcctcgaggcgcagcgccttcgtatgcgcacgacctacgacctcgagatgatgcgc
caggtcggtttctgctcgggtatcgagaactactcgcggcacatcgacggcaggccggcg
ggtagcgctccggcgacactgatcgactattttcccgacgacttcctactggtcatcgac
gagtcgcacgtcaccgttccgcagatcggcggtatgtacgagggagacatgtcgcgcaag
cgcaatctggtcgactacggcttccgcctaccgtcggctgtcgacaaccgtccgctgacc
tgggacgagttcgtcgggcgtatcgggcagaccgtgtacctgtccgccacgcccggcgcg
tatgagctgggccagtccaacggcgagttcgtcgagcaggtgatccgcccgaccggtctg
gtcgatccgcagatcgtggtgaagccgacgaagggtcagatcgacgatctggtccatgag
atccgcgaccgcaccgatcgcgaagagcgtgtactggtgaccacgttgacgaagaagatg
gcagaggatctcaccgactatctgctcgagctgggtatccgcgtgcgatacctgcattca
gaggtcgacaccctccgccgtgtcgaattgctgcggcagctgcgctcgggtgaatacgac
gtccttgtcggcatcaatctgctgcgtgagggcctcgaccttccagaggtgtcactggtc
gccatcctcgacgccgacaaggagggcttcctgcgctccacgacgtcgctgatccagacc
gtcgggcgcgctgcgcgaaatgtctcgggcgaagtgcacatgtacgccgacaccatcacc
gactcgatgcgcaatgcgatcgacgagacggaacgtcgtcgcgagaagcaggtcgcctac
aacaaagagcacggcatcgacccgaaaccgttgcgcaagaagatcgccgacatcctcgac
caggtgtatcgcgaagccgaggattccgctgtcgacgtcggtggctcggggcgaaacgcc
agcaggggtcggcgcgcgcagggcgaggtctccaaggccaagggcgcgtcggcgggggtc
atcgagaagcgtgacgtctcgtccatgccgagagctgaactggccgacctggttgcacag
ctcaccgagcagatgatgagcgctgcccgggatctgcagttcgaactcgcaggccgactg
cgtgacgagatcgccgacctgaagaaggaaatgcgcggcatggatgccgccggaatcaag
tag

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