Gordonia otitidis: LK459_20600
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Entry
LK459_20600 CDS
T07915
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
goi
Gordonia otitidis
Pathway
goi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LK459_20600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_20600
Enzymes [BR:
goi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LK459_20600
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LK459_20600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UEA58903
LinkDB
All DBs
Position
4506743..4510231
Genome browser
AA seq
1162 aa
AA seq
DB search
MAPTSFDVAAPLPDNTTVLEASAGTGKTYAIVGVAARRIADGLPIDKLLLVTFSRSASAE
LRDRMRSRLADLVVALDPARVHTDPAGDDDPVLRAVLAGSPAEIATRRGRLMQALADFDA
STIATTHTFCNRMLEALGFLGERELIYDVVEDTDEIVEQTALDLYLSHFAGDADPPPFSI
GDAMTIARDAVRSAGIPLAPQPADTSDGPPARPSTATLRVQFCEQVRRRVERRKRLARLR
TYDDLQMILYRVVTDDKIGEAACSRIRASFDLILVDEFQDTDPFQWEILRRCFHGHKQLV
LVGDPKQSIYAFRGAEVRSYLRAVDVADSLRALDTNHRSDADLVNALDRIYGGASLGDPA
ITVHPVKAARAASRITGAPALRVRAFSRTDFTVRGRSGFPSVGDVRAAITTDVAHDIAHL
LSSETRLDTGDGPRPVTPGDIAVLVRTNGTIEPLQRALAELGIASVVGTGTSVFRTISAL
HWLWVIRAIEQPARADRVRLAALTPLIGWSAAELADASDTRLAELSSMFAELGRVFAEGG
FAALSGRLLAQQGVAERVLALDDGERALTDLLQVSSLVNTHVVDTESGLAGVVEWLADRI
ADESHWRRHEDQTRRLDRDTHVVQIMTVHASKGLQFPIVYVPFGWDAARVAKPKTFRYHD
DAGDRHLDVGGEGTPGWGERIARRNDEEAGEDLRLLYVALTRAASQVVVHWAPSYNTSKG
PLHRLLFGRRRHSGSNAFDGADSSAVPTAVNVPDDHTCVATLRALTAGPPASVSVEHVTV
SPAPVWSPPSHSEPGAALDVARFTRTIDQQWRRTSYSALTAGAAHGHPTLTTGSEPDVAS
GAERGLITDEPLLGSPDTDDPYAATDSAVDAEQDTISGTPSLMNGMPFGAAFGTLVHEVL
EYVDTAAPDIDAHIRELCATSANRHALEVDVDELATAVRAVLTTPLASLESDLWSFGPRD
RLAELDFEFPLAGQTPARGEERTAGEHRASPGVTNGAAPVLADIATLMERHLPADDRLRG
YAEALAEIPPRALRGYLTGSIDSVLRTPDDRYVIVDYKTNRLRPGALTAEDFTADAMATE
MISAHYPLQALLYSVALHRYLRWRLPGYRPEVHLGPVQYHFVRGMVGADTPAGCGVYEWY
IPPELVTELSDLLAGVEGGDHR
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccccgacgtccttcgatgtcgcggcgccgttgcccgacaacacgacagtcctcgag
gccagtgcgggtaccggcaagacctacgcgatcgtcggcgttgctgcccgtcggatcgcc
gacggcctgccgatcgacaaactgctgctggtcacgttcagtcgatcggcgagtgccgaa
ctgcgtgaccggatgcgatcgcgccttgccgacctggtcgtcgcactcgaccccgcgcgg
gtacacaccgacccggccggtgacgacgacccggtcttacgcgccgtgctggccggaagt
cctgccgagatcgccactcgccgtggacgtctcatgcaggcgctcgcggatttcgacgcc
tccacgattgcgacgactcacacgttctgcaaccgaatgctcgaggccctcgggttcctc
ggtgagcgcgagctgatctacgacgtcgtcgaagacaccgatgagatcgtcgaacagact
gcgctcgacctgtatctgtcccatttcgccggagatgcggatccgccgccgttttccatc
ggcgacgcgatgacgatcgcgcgcgacgccgtgcgcagcgccggcatcccgctcgcgccg
caaccagccgacacgtcggacggcccgcccgcacgtccgtcgactgcgacgctgcgagtg
cagttctgcgagcaggtgcgcaggcgggtcgaacgccgaaagcgcctcgcgcggttgcgg
acctacgacgatctgcagatgatcctgtaccgcgtggtcacggacgacaagatcggcgaa
gccgcgtgcagtcgtatccgtgcgtcgttcgacctgatcctcgtcgacgagttccaggac
accgacccgttccagtgggagatcctgcgtcgctgtttccacgggcacaagcaactcgtc
ctcgtcggcgacccgaaacagtcgatctatgcgttccgaggtgcagaggtccgtagctat
ctcagggccgtcgacgtggcggattcactgcgtgcgctcgacaccaaccaccgttccgac
gccgacctggtgaacgcgctggatcgcatctacgggggtgcgagcctcggcgaccccgcg
atcacggtgcacccggtcaaggctgcgcgcgccgcaagccggatcacgggagcgcccgcg
ctgagggtgcgggccttctcacgaaccgacttcactgtgcgcgggaggtctggcttccca
tccgtgggcgacgtccgcgcggcgatcaccaccgatgtcgcacacgacatcgcacatctt
ctctcatcggagacccggctcgacacgggagacggtccacgcccggtcacccccggcgac
atcgccgtcctggtccgaaccaacggcacgatcgaaccacttcagcgtgcgctggcagag
ctcgggatcgcctcggtcgtgggcaccggtaccagcgtgttccgcacgatcagcgcgctg
cattggttgtgggtgatccgcgccatcgagcagccggcacgcgccgaccgcgtccggctc
gccgcattgacgccgttgatcggatggtcggcagccgaactcgcggacgcttcggacact
cgtctcgccgaactgtcgtcgatgttcgccgaactcggacgtgtcttcgccgaaggtggg
ttcgccgcgctctccggtcgccttctcgcacagcagggcgtcgccgagcgggttcttgcg
ctcgacgacggtgaacgcgccctgaccgatctcctccaggtctcgtcactggtgaacacg
cacgtcgtcgacaccgaaagcgggctcgccggtgtcgtggagtggttggccgatcgcatc
gcggacgaatcgcactggcgccgtcacgaagaccagacccgacgactcgaccgcgacacg
cacgtcgtgcagatcatgacagtgcacgccagcaagggattgcagttccccatcgtctac
gtaccgttcgggtgggacgccgctcgcgtcgccaaaccgaaaacctttcgctatcacgac
gatgcgggcgaccgtcacctcgatgtcggtggcgaggggactcccggatggggcgagcgc
atcgcccgtcgtaacgacgaggaggcgggggaggatctgcgtcttctctacgtggcgttg
acccgcgcggcctcccaggtcgtcgtgcactgggcgccgtcgtacaacacgtccaagggg
ccgctgcaccgcttgctgttcggacgccgacggcacagtggttcgaacgcgttcgacggc
gccgactcatcggccgtacccactgcggtgaacgttcccgacgaccacacatgtgtcgca
accctgcgtgcactgacggccggacccccggcctccgtcagcgtcgaacacgtgacggtg
tcgcccgcgcccgtatggtcgccgccgagccattctgagccgggcgcggcactcgacgtc
gcacgcttcacgcgcacgatcgaccagcagtggcgacgcacctcctactcggcactcacc
gccggcgccgcgcacggacacccgacactgaccaccggcagcgagcccgatgtggcgtcc
ggcgccgagcgcggactcatcacggacgaacctctgctcggcagccccgacaccgacgac
ccctatgcggcaaccgattcggcggtcgacgccgaacaggacacgatcagtggaactccg
tcgctgatgaacggaatgccgttcggtgcagcgttcggcaccctcgtgcacgaggtcctc
gaatacgtcgacaccgccgcccccgacatcgacgcacacatcagagaactctgcgcaacc
tcggccaaccgacacgctctcgaagtcgacgtcgacgaactcgccacagcggtccgcgcg
gtcctcaccacaccgctggcatcactcgagagcgacctgtggtcgttcggcccgcgagat
cgattggccgaactcgacttcgagttcccactcgcaggccagacccctgcccgaggtgag
gagcggacggcaggtgagcaccgggcatcaccgggcgtcaccaacggcgcggcgcccgta
ctcgccgacatcgcgacgctcatggagcgccacctacccgccgacgatcggttacgcggg
tacgccgaagcgctcgccgagatacctccgcgtgccctgcgcggctacctcaccggaagc
atcgattccgtcctgcgcacaccggacgaccgctacgtgatcgtggactacaagaccaac
cgattgcgtccgggcgcactgactgccgaggatttcaccgccgatgccatggccaccgag
atgatcagcgcacactatccgctccaggcgttgctctattccgttgcgctgcaccggtat
ctgcggtggcgactgcccggttatcgaccagaggtacatctgggcccggtgcagtaccac
ttcgttcgcggaatggtcggggccgacaccccggcggggtgtggggtctacgagtggtac
atcccgccggagctggtcaccgagttgtccgatctcctcgcaggtgtcgaaggaggcgac
cacagatga
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