Gordonia otitidis: LK459_20605
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Entry
LK459_20605 CDS
T07915
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
goi
Gordonia otitidis
Pathway
goi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LK459_20605 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_20605 (recD)
Enzymes [BR:
goi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LK459_20605 (recD)
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LK459_20605 (recD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
AAA_22
TraI_hel_assoc_N
UvrD-helicase
PhoH
Helicase_RecD
AAA_16
AAA_5
Mg_chelatase
RecD_N
AAA_25
PSII_Pbs31
Motif
Other DBs
NCBI-ProteinID:
UEA58904
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All DBs
Position
4510228..4512087
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AA seq
619 aa
AA seq
DB search
MSDEIPVVWPVDDARRVRDADGVLADANAAGLLAASDLHVTSRMIRMCGEPVGAAAQVAT
ALAVRSVRLGSTCFALSTVADLPGATSLRLPSAAEMLLDLRTSPLVAGARGSTLRPVVLR
ESDDGVLVYLQKYFRQEQAIREILADRTATAPDVDEDAVHAEVARAFAGNGSDGAEPRQC
LAAEVAASRWTTILAGGPGTGKTYTVARILAVLDALSGGDLRIGMCAPTGRAAAQLQASV
DVDGALPTSVRAVTVHSLLGWRPGSTPRYGKGNKLPHDVIVVDETSMLSMTAMSRLLDAV
RSDARLILVGDPNQLASVEAGAVLADLVDRAPTPTSASPAPIPRIDPSIDMGERELSRLR
EGVVTLRRGFRFGGQISRVADAVNRGDADAVLDLVTSPEVGDVALVAPDDLRDVHDDIVA
WGRALHAAAEAGDVDAALSALDSHRVLCAHREGSWGVRGWQTRVADWLSEQPDHPRVDLD
TVSWSVGQPLLVTANDRQTGTFNGDCGVVVHTGGPHDLRSAVAFRRGSEERLVAPVQLPD
VAPAYAMTIHRSQGSQFGGVTIVLPPAGSELLTRELLYTAITRARTRVRIVGTRDVLAEA
VDRRFHRASGLRSEVRELV
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgagatcccggtcgtgtggcccgtcgacgatgcccggcgggtgcgcgacgcc
gacggcgtgctcgcagacgcgaacgccgcaggtctgctcgccgcctccgacctgcatgtc
acctcgcggatgatccgcatgtgcggcgaaccggtcggagccgcagcgcaggtcgcaacc
gccctcgccgtccggtcggtccgactcggatcgacgtgtttcgcgttgtcgacggtcgcc
gacctgcccggtgcgacctcgctacgccttccctcggcggccgagatgctgctcgaccta
cgtacctcaccactggtggccggagcacgcggatccacgttgcgtcccgtggtgttgcgg
gagtccgacgacggtgtgctcgtctacctccagaagtacttccgtcaggaacaagcgatc
cgcgagatactcgccgaccgcacagccaccgcacccgacgtcgacgaggacgccgtccac
gccgaggtcgcacgagcgttcgccggcaacggaagcgatggagcagaaccgcggcaatgc
ctcgccgccgaggtcgccgcgtcgcggtggacgacgatcctcgcgggcgggccgggcacc
ggcaagacctataccgtcgctcgaatcctcgcagttctcgacgctctctcgggaggcgat
ctccggataggtatgtgcgctcccaccggccgcgcggcagcccagctccaggcgtcggtc
gatgtcgacggggcactgcccacctcggtccgtgcggtgacagtgcacagccttctcgga
tggcgaccgggttcgacgcccaggtacgggaagggcaacaagttgccccatgacgtgatc
gtcgtcgacgagacgtcgatgctgtcgatgacggccatgagtcgtctgctcgacgcagtg
cgctccgatgcacgcctcatcctcgtcggcgacccgaaccagctggcgtcggtggaggcc
ggagcggttctcgccgatctcgtcgatcgtgcaccgacccccacatccgcatcaccagcg
cccatccctcggatcgatccgtcgatcgacatgggtgagcgtgaattgtcacgtctgcga
gagggagtcgtcacgctacggcggggattccgattcggcgggcagatctcgcgcgtcgcc
gacgcggtcaaccgcggagacgccgacgcggtcctcgacctcgtcacgtcgcccgaggtc
ggcgacgtcgcgctcgtcgctccggacgacctccgcgacgtccacgacgacatcgtcgcg
tggggtcgcgcactgcacgcggccgcagaggcgggcgatgtcgatgcggcgttgtcggcg
ctcgactcgcaccgggtgttgtgcgcacatcgcgagggcagctggggcgtccgcggctgg
cagacgcgggtcgccgactggctctcggagcagcccgatcatccgcgcgtcgacctcgac
accgtgtcctggtcggtcggccagccacttctcgtgaccgcgaacgaccggcagaccggg
acgttcaacggcgattgcggtgtggtcgtgcataccggcgggccccacgacctgcgctcg
gctgtcgccttccgacggggatccgaggaacgattggttgcaccggtgcaactgcccgac
gtggcgcccgcgtacgcgatgaccattcaccgcagtcagggaagccagttcgggggcgtc
accatcgtgctaccgccggcggggtcggagttgctgacccgcgaactcctctacaccgcg
atcacccgggcacgtacgcgcgtgcggatcgtcggaacgcgcgacgtgctggccgaggcc
gtggaccgacgattccatcgcgccagcggattgcgctcggaggtcagggaactggtgtga
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