Gordonia otitidis: LK459_22935
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Entry
LK459_22935 CDS
T07915
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
goi
Gordonia otitidis
Pathway
goi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK459_22935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goi03019
]
LK459_22935
Messenger RNA biogenesis [BR:
goi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LK459_22935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF459
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UEA59313
LinkDB
All DBs
Position
complement(5068890..5070893)
Genome browser
AA seq
667 aa
AA seq
DB search
MAAPRRRSASRKAGPPTPVEERPVQTTAPAQSAPSQPAATQSAPSQPAATQSAPAQQSGR
ASGDQNQGRGRRRGRHERKDDTQGAAGKQSGSQAQPARRESVPVDPAVDRLGTPRKLPRG
GLRVVALGGIGEIGRNMTVFEYNGRLLIVDAGVLFPEDAQPGVDLILPDFRYIEDRIDDV
EAVVLTHGHEDHIGAVPFLLRLRSDIPVVGAKFTLALVDAKCKEHRLRPKLVEVREGDRL
DYGPFDLEFFAVNHSIPDALAVAIRTPAGLVLHTGDIKLDQLPLDHRLTDLAGFSRLGDE
GVDLFLVDSTNAEVPGFVTPEREIGSVLDQVIGKAKQRVIVASFASHVHRIQQIIDVAHA
HNRRVTFVGRSMVRNMQIAQDLGYLHVPDGVVVDMDTAATLPDHRLVLISTGSQGEPLSA
LSRMARGEHRQINIRADDLVVLASSLIPGNENSVFAVVNGLAKRGATVITQQNAKVHVSG
HASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAVATGVHPDRVMLAEDGVVVDLVDG
RAEIVGRVPVGHVYVDGLSVGDVGESTLSERLVLGEGGFIAITVAVDTATGRPVSPPEVS
GRGFSDDPEALKEAAGLVDQALDSLAAEGVTDTHRIAQTIRRVVGRWVADTYRRRPMIVP
TVLAVGS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaccgcgtcgacgcagcgcctcccgcaaggccggaccgcccactcccgtcgag
gagcgtccggtacagacaacggctcccgcccagtcggcccccagccagcccgctgccacc
cagtcggcccccagccagcccgctgccacccagtcggctccggcacagcagagcggccgg
gcgtccggggaccagaaccagggccgcggacggcgtcgcggtcgccacgagcgcaaagac
gacacgcagggtgccgcgggcaagcagtccggatcgcaagcacagccggcgcggcgtgag
tccgttcccgtcgacccggccgtcgatcggctcggcaccccgcgcaagctcccacgaggt
ggactgcgggtcgtcgcgctcggcggtatcggcgagatcggccggaacatgaccgttttc
gaatacaacggccggcttctcatcgtcgacgccggagtcctgttccccgaggacgcgcag
cccggtgtcgacctgatcctgcccgacttccgttacatcgaggaccgcatcgacgacgtc
gaggccgttgtcctgacgcacggtcacgaggaccatatcggcgcagtcccgttcctgctg
cgcctgcgcagcgacattccggtcgtgggcgcgaaattcacgctcgcgctggtcgatgcc
aagtgcaaagaacatcgcctgcggcccaagctcgtcgaggtacgtgagggggatcggctc
gactacggaccgttcgacctcgagttcttcgcggtcaaccattcgatccccgacgcgttg
gctgtcgcgatccggacaccggcaggcctggtgctgcacaccggcgacatcaaactcgat
cagctgccactcgaccaccgactcaccgacctcgccggattcagccggctcggtgacgag
ggtgtcgacctgttcctcgtcgactccaccaatgccgaggtgcccggtttcgtcacaccc
gaacgtgagatcggctccgttctcgaccaggtgatcggcaaagcgaaacaacgcgtgatc
gtcgcctccttcgccagccacgtgcaccgaatccagcagatcatcgacgtcgcgcacgcg
cacaacaggcgtgtcacgttcgtcggacggtcgatggtgcgcaacatgcagatcgcacag
gatctcggctacctccacgtgcccgacggcgtcgtcgtcgacatggacaccgccgcaacg
cttccggatcaccggctcgtactgatctccacgggttcgcagggtgagccgctgtctgcg
ctgtcgcggatggcgcgtggcgagcaccgacagatcaacatccgggccgacgatctcgtg
gtgttggcgtcgtcgctgatcccgggcaacgagaactcggtgttcgccgtggtcaacggt
ctcgcgaagcgcggcgccactgtcatcacgcagcagaacgccaaggttcacgtgtccgga
cacgcgtcggcgggggaactgctctacctctacaacgcggtgcgtccgacgaatgcgatg
cccgtccacggtgagtggcgccacctgcgtgccaacgccgcgctcgcggtcgcgactggc
gtgcaccctgatcgcgtcatgctggccgaggacggtgtcgtcgtcgacctcgtcgacggt
cgggccgagatcgtcgggcgcgtgcccgtcggtcacgtgtacgtcgacggtctgtcggtc
ggagatgtgggggaatcgaccctgtcggaacgtctcgtgctcggcgagggtggattcatc
gcgatcaccgtcgcggtcgacaccgcaacgggacggccggtcagcccacccgaggtgtcc
ggacgcggattctccgacgatccggaggcgctcaaggaagccgccgggctcgtcgatcag
gcactcgattcgcttgcggcagagggtgtcaccgatacgcatcggatcgcacagacgatt
cgccgcgtcgtcggccggtgggtggccgacacctaccgtcgacgcccgatgatcgtgccg
accgtgctggccgtcgggtcctga
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