Gordonia sp. JH63: GR168_02745
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Entry
GR168_02745 CDS
T10304
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
goj Gordonia sp. JH63
Brite
KEGG Orthology (KO) [BR:
goj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goj03032
]
GR168_02745 (topA)
03400 DNA repair and recombination proteins [BR:
goj03400
]
GR168_02745 (topA)
Enzymes [BR:
goj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GR168_02745 (topA)
DNA replication proteins [BR:
goj03032
]
Prokaryotic type
DNA Topoisomerases
GR168_02745 (topA)
DNA repair and recombination proteins [BR:
goj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GR168_02745 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
SBP_bac_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QHD84430
LinkDB
All DBs
Position
611482..614565
Genome browser
AA seq
1027 aa
AA seq
DB search
MAETSTASRSNRGIRRLVIVESPTKARKIAGYLGANYVVESSRGHIRDLPRGAADVPAKY
KGQSWARLGVNVDENFEPLYVVSPDKKSTVSELKSLMKDVDELYLATDGDREGEAIAWHL
LETLKPKIPVKRMVFHEITEPAIRAAAENPRDLDIDLVDAQETRRILDRLYGYEVSPVLW
KKVMPKLSAGRVQSVATRIIVERERERMAFVSAEYWDISATMDASAESADSSNPQTFKAR
LVNVDEARVATGRDFESTGVLKRSDGVIVLDADRAESLATGLRGAGMTVTSVEEKPYTRR
PYAPFMTSTLQQEAGRKLRFTSDRTMRIAQRLYENGFITYMRTDSTSLSESAINAARAQA
RELYGDNFVHPTPRQYTRKVKNAQEAHEAIRPAGETFRTPGQVAGQLEADEFRLYELIWQ
RTVASQMADAKGTTLSLRIAGTASSGERCTFAASGRTITFPGFLSAYVETVDELSGGQAD
DAENRLPQLTEGQSLTATDLTADGHSTNPPARFTEASLVKVLEELGIGRPSTYASIIGTI
QDRGYVVKKGNALVPSWIAFAVVGLLEAYFQSLVDYDFTATLEDDLDQIATGNENRTKWL
SEFYFGDDHQGADGETRSAHSAIAQYGGLKKLVGVNLEEIDARQVNSIRLFNDEEGRPIY
VRVGRYGPYLERNVAADGAEEDLQRANLPADITPDELTLAVAEKLFATPQEGRSLGTDPV
TGHEIVAKEGRFGPYVTEVLPSDDDDDDGDTPATIPAGPTPRDGGSGGGTGGSDTADGAV
VPLDSPGGGTATKTKPAAKKTAKKAAKKAGPKPRTGSLFKTMDISTVTLEDALKLLSLPR
VVGVDPESGDEITAQNGRYGPYLKKGSDSRSLGTEEQLFEITLDEALKIYSEPKRRGRQA
AAPPLRELGKDDEVSGKPMVIKDGRFGPYVTDGETNASLRKGDEVASITPERAMELLADR
RARGPAKKAAKKTTKKAAAKKAPAKKTAAKKTAAKKTAAKKTTAKKTAAKKSTAKKTAAK
KATPDAE
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
gtggcagagaccagcaccgcatcccgctcgaacaggggtattcgacgcctcgtgatcgtc
gagtccccgaccaaggcccgcaagatcgccgggtacctgggggcgaactatgtggtggag
tcctcccgagggcacatccgcgacctcccgcgcggtgccgccgacgtgccggccaagtac
aaggggcagtcctgggcacgtctcggcgtgaacgtcgacgagaacttcgagccgctgtac
gtggtgtcgcctgacaagaagtcgaccgtcagcgaactcaagtcgctgatgaaggacgtc
gacgagctctacctcgccaccgacggtgaccgcgagggggaggcgatcgcctggcatctc
ctcgagaccctcaagccgaagatccccgtcaagcgcatggtgttccacgagatcaccgag
ccggccatccgggcggctgccgagaacccgcgtgacctcgacatcgacctcgtcgacgcg
caggagacccgacgcatcctcgaccgcctctacggctacgaggtgtcgccggtgctgtgg
aagaaggtcatgccgaagctgtcggcgggccgtgtgcagtcggtggcgacgcgcatcatc
gtcgagcgggagcgcgagcgcatggcgttcgtgtcggccgagtactgggatatctccgcg
acgatggacgcgagcgcggagagtgcggacagctccaatccgcagaccttcaaggcgcgg
ctggtcaacgtcgacgaagcccgggtcgccacgggacgcgacttcgagtcgacgggtgtc
ctgaagaggtccgacggcgtcatcgtgctcgacgccgaccgcgccgagagtctggccacc
ggcctgcgaggtgcggggatgaccgtcacctcggtcgaggagaagccctacacgcgccgt
ccgtacgcgccgttcatgacctcgacgctgcagcaggaggccggccgcaagttgcggttc
acctccgaccgcacgatgcggatcgcgcagcggttgtacgagaacggcttcatcacctac
atgcgtaccgactcgacgagcctcagcgagtcggcgatcaacgccgcccgcgcccaggcc
cgcgagctctacggcgacaacttcgtccacccgacgccgcgtcagtacacccgcaaggtc
aagaacgcccaggaagctcacgaggcgatccgacccgccggtgagaccttccgtaccccc
ggccaggtggccgggcagctcgaggccgacgagttccgcctgtacgaactgatctggcag
cgcacggtcgcgtcgcagatggccgacgccaagggcaccactctgagcctgcgtattgcc
ggtaccgcctcttccggagagcgctgcacctttgccgcgtcaggtcgcacgatcaccttc
ccgggcttcctgtcggcctacgtggagacggtcgacgagctcagcggcggccaggccgac
gacgccgagaaccggttgccgcagctcaccgaggggcagtcgctgacggccaccgacctg
acggccgacggtcactccaccaacccgcccgcgcggttcaccgaggcgtcgctggtgaag
gtgctcgaggaactcgggatcggccgaccgtcgacgtatgcgtcgatcatcggcaccatc
caggaccgcgggtacgtggtcaagaagggcaacgccctggtgccgtcgtggatcgcattc
gcggtcgtcggtctgctggaggcgtacttccagagcctcgtcgactacgacttcaccgcg
accctcgaagacgacctcgatcagatcgccacgggtaacgagaaccgcacgaagtggttg
tcggagttctacttcggcgatgatcaccagggtgccgacggtgaaacccgttccgcccac
tcggcaatcgcgcaatacggcggtctgaagaagctcgtcggcgtcaatctcgaggagatc
gacgcacggcaggtcaactccatccgtctgttcaacgacgaagagggccgcccgatctac
gtgcgggtcggccgttacgggccgtatctcgagcgcaatgtcgccgcggacggtgcggaa
gaggatctgcagcgcgccaacctgcccgctgacatcaccccggacgagttgaccctcgcg
gtcgccgaaaagctcttcgcgacaccgcaagagggacgttcgctcggtacggaccccgtc
accggtcacgagatcgtcgccaaggaaggacgtttcggtccgtacgtgaccgaggtcctg
ccgtcggacgacgatgacgacgacggggacacgcccgcaaccattcccgcgggcccgacg
ccgcgtgacggcgggtcgggcggcggcaccggaggttcggacaccgccgacggcgccgtc
gtcccgctcgactcgcccggcgggggcacggccaccaagacgaagccggcggcgaagaag
accgcgaagaaggcggcgaagaaggccggtcccaagccgcgtacgggctcgctgttcaag
acgatggacatctcgacggtcacgctcgaggacgcgctgaagctgctgtcgctgccgcgc
gtcgtcggcgtcgacccggagtcgggcgacgagatcaccgcgcagaacggccgttacggc
ccgtatctcaagaagggctcggactcgcggtcgctcggcaccgaggagcagctcttcgag
atcaccctcgacgaggcgctgaagatctattcggagcccaagcgtcgcggtcgtcaggcc
gccgcgccgccgttgcgtgagctcggcaaggacgacgaggtcagcggcaagccgatggtc
atcaaggacggtcggttcggaccgtacgtgaccgacggcgagaccaacgccagcctgcgc
aagggcgacgaggtcgcctcgatcacgccggagcgcgcgatggagttgctcgccgatcgt
cgggctcgtggcccggccaagaaggctgccaagaagaccacgaagaaggcggcggcgaag
aaggcccccgccaagaagacagcggccaagaagacggcggcgaagaagaccgcagcgaag
aagacgacggcgaagaagaccgcagccaagaagtcgaccgccaagaagacggcggccaag
aaggcgacgccggacgccgagtaa
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