Gordonia sp. JH63: GR168_07215
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Entry
GR168_07215 CDS
T10304
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
goj Gordonia sp. JH63
Pathway
goj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
goj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GR168_07215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goj03400
]
GR168_07215 (mfd)
Enzymes [BR:
goj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GR168_07215 (mfd)
DNA repair and recombination proteins [BR:
goj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GR168_07215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
AAA_22
DUF3638
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QHD85201
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All DBs
Position
1593791..1597372
Genome browser
AA seq
1193 aa
AA seq
DB search
MSTLSALSGLATLACADKSFREVHKHRDERRLDITAPDAARPFLVSCLVTDAQAPLLVVS
ANGREADDLTAELGELLDDAGAVAQFPSWETLPHERLSPSADTVGQRLAVLHRLANPGDT
PLRVVVTTVRSLVQPMAPGLADVATVTLREGIEVDFDALLSQLVEMAYERVDMVGRRGEF
AVRGGILDVFPTTADHPVRVEFWGDEITEMRAFSVADQRSQPEVEASEVRIHPCRELLLT
EKVRARAADLAAADPGDTTMTEMLGKLAEGIPVEGMEALIPALVDGDMQLLTEVIPDGTR
VLILDPEKVRTRASDLSKTGAEFLEASWTAAAMGASAPIDGRSSESLGIDLQASAYRSLD
EVRKATLAAGRPWWTLSPLATGSGDELELDLAPGPAPRGDDREIAATFAQLRAHVSDGKT
AAIVVAGKGTAQRVGERLSDAEVPYVIAEPGHRPQPGEVTVFCAPLRAGIVCPDAGLVVV
AEADLTGTRVANVRDGRRLPAKRRNQVDPLALAAGDLVVHDQHGIGRFVEMIERTVSGAR
REYLVLEYASSKRGQPADRLYVPMDALDQLSRYVGGEQPSLSKLGGSDWQNTKRKARKAV
REIAGELVQLYAARHAAPGHAFGPDTPWQQEMEDAFDFTETVDQLTVIAEVKADMERAVP
MDRVVVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQHLQTFTERMSGFPVRVR
GLSRFTDAKESREIAEAMSKGEVDVVIGTHRLLQTGIVWKDLGLVIVDEEQRFGVEHKEH
IKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYAPKQVAAA
IRRELLRDGQVFYVHNRVSTIDKMAKDIAAMVPEARVVVAHGQMGEDQLERTVSGFWNRE
YDVLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVGRSRERGYAYLLYSPDRP
LTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYVRLVGE
AVEAYRAAADGKPVESRETGEVRIDLPVDAHIPVEYVDSDRLRLEAYRKLASATDDAAVD
SVLVELNDRYGPPPVETTRLASIARLRLRCRERGITEIGLAGQGMKISPLSLLDSEQVRL
RRLYSSATYRATTSVVTLPIPRTGGVGSARLRDDELIEYLTTFLTQLRPEPVT
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgacgctgtctgccctgtccggtctggccacactcgcgtgtgcggacaagtccttc
cgcgaggtgcacaagcaccgcgacgagcgccgactggacatcaccgcgccggatgccgcg
cgccccttcctcgtctcgtgcctggtcaccgatgcgcaggcgccgctgttggtcgtgtcg
gccaacggccgcgaggccgatgatctgacggcggagctgggcgaactcctcgacgacgcc
ggggccgtcgcacagttcccgtcctgggagacgctgccgcacgagcggctctccccgagt
gcagacaccgtcggacagcgactggccgtgctgcaccgcctggcgaaccccggcgacacc
ccactgcgggtcgtcgtgaccactgttcgctcgctcgtccagccgatggcaccgggcctc
gccgacgtcgccacggtgaccctgcgtgagggcatcgaggtcgacttcgacgcactgctg
tcccagttggtcgagatggcctacgagcgcgtcgacatggtcggccgacgcggcgagttc
gcggtacgcggcggtatcctcgacgtctttccgacgaccgccgatcatccggtgcgcgtg
gagttctggggcgacgagatcaccgagatgcgtgcgttctcggtggccgaccagcgcagc
cagcccgaggtcgaggccagcgaggtgcggattcacccgtgccgtgaactgctcctgacc
gagaaggtccgtgcgcgggccgccgatctcgcggccgccgatccgggcgacacgaccatg
accgagatgttgggcaaactcgccgagggcatcccggtggaggggatggaggcgctgatc
cccgcgctcgtcgacggcgacatgcagttgctgaccgaggtgatccccgacggcacccgg
gtcctcatcctcgacccggagaaggtgcggacccgggcctcggatctgtcgaagacgggt
gcggagttcctcgaggcgtcgtggacggcggcggccatgggcgcctcggcgccgatcgac
ggccggtcgtcggagagcctcgggatcgatctgcaggccagcgcgtaccggtctctcgac
gaggtgcggaaggcgacactcgccgcgggccggccctggtggaccctgagtccgctcgcg
accggcagcggtgacgaactcgaactggacctggctcccggcccggcgccacggggcgac
gaccgcgagatcgcggcgacgttcgcgcagttgcgcgcccacgtctccgacggcaagacg
gcggcgatcgtggtggcgggcaagggcaccgcgcagcgtgtcggcgaacgactgtccgac
gccgaggtgccctacgtgatcgccgaacccggacatcggccgcagcccggcgaggtgacc
gtcttctgcgcgccgctgcgtgccggaatcgtctgtcccgacgcgggtctcgtggtggtc
gccgaggccgacctcaccggtacacgggtcgcgaacgtccgggacggccgccggctgccg
gcgaagcggcgcaaccaggtcgacccgctcgccctggccgccggcgacctggtggtgcac
gaccagcacggcatcggccggttcgtcgagatgatcgagcggaccgtctcgggtgcccgg
cgcgagtacctcgtcctggagtacgcctcgagcaaacgcggccagccggccgatcggttg
tatgtcccgatggacgcactcgaccagctctcgcggtacgtcggcggcgaacagccgtcg
ctgtcgaaactcggcgggtcggactggcagaacacgaagcgcaaggcgcgcaaggctgtt
cgcgagatcgccggcgagctcgtacagctctatgccgcccgccacgccgcgcccggacac
gcattcggtcccgacaccccgtggcagcaggaaatggaagacgccttcgacttcaccgag
accgtggatcagctcacggtcatcgccgaggtcaaggccgacatggaacgtgcggtgccg
atggaccgcgtcgtcgtcggcgacgtcggttacggcaagaccgagatcgccgtccgtgcc
gccttcaaggccgtccaggacggcaagcaggtcgcggtcctggtcccgacgacgattctc
gcgcaacaacatctgcagaccttcaccgaacggatgagcggcttcccggtgcgcgtgcgc
ggcctgtcgcgcttcaccgatgccaaggagtcacgcgagatcgccgaggcgatgtcgaag
ggcgaggtcgacgtcgtcatcggtacccaccgactgttgcagaccgggatcgtctggaaa
gacctcggactcgtgatcgtcgacgaggagcagcggttcggtgtggaacacaaggaacac
atcaagtcgctgcgcacccatgtcgacgtgctgacgatgtcggccaccccgatcccgcgc
acgctggagatgtcgatggccgggatccgcgagatgtcgacgatcctgaccccgcccgag
gaacggcacccggtgctcacctacgtcggtgcctacgcgcccaagcaggtcgccgccgcc
atccgccgcgagctgttgcgtgacggccaggtcttctacgtgcacaaccgggtgtcgacc
atcgacaagatggccaaggacatcgcggcgatggtcccggaggcgagagttgttgtcgca
catgggcagatgggcgaggatcagctcgagcgcacggtgtcgggattctggaaccgtgag
tacgacgtgctggtctgtacgacgatcatcgagaccggtctggacatctcgaacgccaac
accctgatcgtcgaccgcgccgagaacctcggcctctcgcagctacatcagctgcgtggt
cgcgtcggtcgcagccgcgaacgtggatacgcctacctgctctacagcccggaccggccg
ctgaccgagaccgcctacgaccgcctggcgacgatcgcgcagaacaacgagctcggcgcg
ggaatggcggtggcgctgaaggatctcgagttgcgcggcgccggaaacgtgttgggcgcc
gagcagtccgggcacgtcgcgggcgtcggcttcgatctctacgtccggctggtcggcgag
gcggtggaggcttaccgtgccgccgcggacgggaagcccgtcgaatcccgggagacgggc
gaggtgcgcatcgacctccccgtcgacgcacacatcccggtcgaatacgtcgattccgac
cgcctgcgtctcgaggcgtaccgcaagctcgcgtcggcgaccgacgacgccgcggtcgac
tcggtcctcgtcgaactcaacgaccgctacggcccaccaccggtggagaccacgcggctg
gcgtccatcgcccggctgcgcctgcgatgccgggagcgggggatcaccgagatcggtctc
gccggacagggaatgaagatctcgccgctgtcgctgctcgacagcgagcaggtgcgtctt
cgtcgcctgtactcgtcggccacctaccgggcgacgacgtcggtggtcacgctgcccatc
ccgcgcaccggaggcgtggggtcggcgcgcctgcgcgacgacgagctgatcgagtatctg
acgaccttcctcacccaactgcggccggagccggtcacgtga
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