Gordonia sp. JH63: GR168_09350
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Entry
GR168_09350 CDS
T10304
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
goj Gordonia sp. JH63
Pathway
goj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GR168_09350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goj03019
]
GR168_09350
03009 Ribosome biogenesis [BR:
goj03009
]
GR168_09350
Enzymes [BR:
goj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GR168_09350
Messenger RNA biogenesis [BR:
goj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GR168_09350
Ribosome biogenesis [BR:
goj03009
]
Prokaryotic type
rRNA helicases
GR168_09350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
HEM4
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
QHD85563
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All DBs
Position
2071380..2073152
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AA seq
590 aa
AA seq
DB search
MSTSNHGEHDAPADPQVGSFDDLEIDPRVRAAITDVGYETPSPIQAATIPPLMDGRDVVG
LAQTGTGKTAAFAIPILSRLDTSARTPQALILAPTRELALQVSEAFGKYSAHMPEVKVLP
IYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDRKTLDISGLEFLVLDEADEMLTMGFAE
DVERILAETPDTKQVALFSATMPSAIRRLAQKYLNSPQEITVKSKTATAQNITQRYLQVS
HQRKLDALTRFLEVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTI
NQLKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLF
VSPRERHLLRAIERATRQTLTEIGLPSVDDVNAQRVAKFADSITQNLSSDNLDLFRGLIE
NYARDNDVAMADIAAALALETRDGGFLMTPDPPQSEKRPERERAPRRPGASFATYRIAVG
RKHKVSPGAIVGAIANEGGLTRADFGNISIRDDFSLVELPDDLDNETLSSLRHTKIGKNP
IDIRKDMGAPRTRGGAKRGAGGHGGGRDGRRGDNWGKRPSPRVAGRGRHS
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctcgaatcacggcgagcacgacgcccccgccgacccgcaggtcggctcgttc
gacgacctcgagatcgacccgcgggtacgcgcggccatcaccgacgtcggctatgaaacc
ccgtcgcccatccaggcggcgaccatcccgccgctcatggacggacgcgatgtcgtcggc
ctcgcgcagaccggtaccggcaagaccgccgcgttcgccatcccgatcctgtcccgcctc
gacacctccgcgcgtaccccgcaggcgctgatcctcgcgccgacgcgagagctggcactg
caggtctccgaggccttcggcaagtattcggcgcacatgcccgaggtgaaggtgctgccg
atctacggcgggcagtcctacggcgtccaactcgcgggtctgcgtcgcggcgcgcaggtc
atcgtcggcacacccggtcgggtcatcgaccacctcgatcgcaagaccctcgacatctcc
ggtctggagttcctggtcctcgacgaagccgacgagatgctgacgatgggcttcgccgag
gacgtcgagcgcatcctcgccgagaccccggacaccaagcaggtcgcgctgttctcggcg
accatgcccagtgccatccggcgcctcgcgcagaagtacctgaactcgccgcaggagatc
acggtcaagtccaagaccgcgaccgcgcagaacatcacgcagcgctatctccaggtttcc
caccagcgcaagctggacgcgctgacacgcttcctcgaggtcgagaccttcgacgcgatg
atcgtgttcgtccgcaccaagcaggcgacggaagaactcgccgagaagctgcgctcgcgc
gggttctccgcggtcgccatcaacggcgacctcgcgcaggcgcagcgggaacggaccatc
aaccagctgaagaacggctcgatcgacatcctcgtcgcgaccgatgtcgcggcccgcggg
ctcgacgtcgaccgcatctcgcatgtcgtgaactacgacatcccgcacgacaccgagtcc
tacgtgcaccgcatcggccgtaccgggcgcgccggccgctcgggcaacgcgctgctgttc
gtctcgccgcgcgaacgccacctgctgcgtgcgatcgagcgcgccacgcggcagacgctg
accgagatcggcctgcccagcgtggacgatgtcaacgcacagcgggtcgcgaagttcgcc
gactcgatcacccagaacctgtcctcggacaacctggatctgttccgcgggctgatcgag
aactacgcgcgggacaacgacgtcgcgatggccgacatcgcggccgcgctggcgctcgag
acacgagacggcggtttcctgatgacgccggacccgccgcagtcggagaagcgccccgag
cgtgagcgtgctccgcggcgcccgggcgcgagcttcgcgacgtaccgcatcgccgtcggc
cgcaagcacaaggtgtcgcccggtgcgatcgtcggtgccatcgccaacgagggcggcctg
acccgtgccgacttcggcaacatcagcatccgcgacgacttcagcctcgtcgagcttccc
gatgatctcgacaatgagaccctctcgtcgctgcggcataccaagatcgggaagaacccg
atcgacatccgcaaggacatgggcgcaccgcgcacgcgcgggggcgccaagcgcggagcc
ggcgggcacggcggcgggcgggacggtcgtcgtggcgacaattggggtaagcgtccgtcc
ccgcgtgtcgcgggccgcggtcgccattcctga
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