Gordonia sp. JH63: GR168_09750
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Entry
GR168_09750 CDS
T10304
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
goj Gordonia sp. JH63
Pathway
goj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GR168_09750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goj03019
]
GR168_09750
03009 Ribosome biogenesis [BR:
goj03009
]
GR168_09750
Enzymes [BR:
goj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GR168_09750
Messenger RNA biogenesis [BR:
goj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GR168_09750
Ribosome biogenesis [BR:
goj03009
]
Prokaryotic type
rRNA processing factors
GR168_09750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
QHD85633
LinkDB
All DBs
Position
2164293..2167820
Genome browser
AA seq
1175 aa
AA seq
DB search
MTDNGSPADANAASESAEEFPSKLRVHALARFLGLTSRQVLAHLANLGVQTRSPQSSVDR
DLAKAVAERVRSGVDETGETPPQAVPAGDAALPDAAADTTPAEAPADTPPTDTAQAEAAS
VETAPTEAVSAEAAPADDAPTADVASTEDAAPTTADDSPAAPAAAEAPTLFSAAQYDAPV
PAPAAETDASTGAQPLFLQPQAPADKPRAARSGRAKTRAETGAKDESADTPADESVAAET
ATSTSADAPARSDRSRADDSTTADRDADVSSPDDSGAEDADDSSTDDFSTDDFNADDSGS
GRSRRRRRGRRGRGRGRGDQGGDSDSDTDESDAEASDADESTGDGATDADTDSEDTTSDE
SAEDSRSEEGRPSGKRTRRRSRRSGADNAEDSEASGAAGDRADESGDDADTADAEDASDD
DDSGDSSSTRRRRRRRRRKGGGEPDEASPDDPPNTVVHEREPRSKRARDEVQGISGSTRL
EAKRQRRRDGRDAGRRRPPILTESEFLARREAVDRVMVVRERSANSRISGNDGHEHAAVE
DYTQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAG
EVNWDAAGLDGGSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGS
STGISRKLPDVERKRLKQILAKLVPDEAGVIIRTASEGVSAEELGADIARLESQWKSIDE
AVTQAKKGGSSSPKPLYEEPDLLVRVVRDLFNEDFKKLVVEGDKAWNLVEGYVSSVASDL
MERVEKFDKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGK
FTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEAL
ARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTACSGRGIIVHANPVEVKTDDSS
RGDGAGSKRPRRGKKKADAQPEAVAPAVAPAHKPAEHPMFRAMAAHAHDDEHGEESGATT
DGDTTSRVEDAPKPVVEGSSPQQTADSRVDTAVTEPTETLPYPVATEPAEMDSAGTESAE
SEPAGVETVPEPAGSATDGQAPAAARRRRRVVRRPAQTTTPPDTVVMTAADVVAETPVTT
SGPVSAANSEAAVAVRRRPRKRSAGRPAGPPPADD
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaacgggtcgccggctgacgcgaacgcagcgtcggaatcggcggaagaattt
cccagcaaacttcgtgtgcacgccctggctcgcttcctgggcctgacgagtcgacaggta
ctggctcacctggcgaatctcggcgtgcagacccggagcccgcagtccagcgtcgatcgt
gacctggcgaaagccgtggccgaacgggtgcgttccggcgtcgacgagaccggcgagaca
cctccgcaagccgtcccggccggcgacgcggctctgcctgacgccgctgccgacacgacc
ccggccgaggcccctgccgacaccccgccgacggacaccgcacaggccgaggccgcatcc
gtcgaaacagcgccgaccgaggcggtgtccgccgaagcggcgcccgccgacgacgcaccg
acggccgacgtcgcatcgaccgaggatgctgcaccgaccaccgccgacgactcgcccgcg
gcaccggccgcggccgaggccccgacgttgttctcggccgcccagtacgacgcaccggtg
ccggccccggccgcggagaccgacgcctcgaccggcgcgcagccgctgttcctgcagcct
caggccccggccgacaagccccgcgccgcccgctcgggtcgtgcgaagacccgcgctgag
acgggcgcgaaggacgagtcggcggacaccccggcagacgagtccgtcgctgccgagacc
gcgacctcgacatcggcggacgcgcccgcccgttcggacaggtcgagggccgatgattcg
accacagctgaccgggacgccgacgtctcgagcccggacgactccggcgccgaggacgcc
gacgattccagcaccgatgatttcagcaccgatgatttcaacgctgatgattccgggtcg
ggtcggagtcgccggcgtcgacgcgggcgtcgtggacgcgggcgcggtaggggagaccag
gggggcgactctgattcggacacggatgagtccgacgccgaggcgtccgatgccgacgag
tcgaccggtgacggggcaaccgatgccgacacggactcggaggacaccacgtccgacgag
tcggccgaggactcgcgctcggaggagggccgtccgtcgggcaaacgcacccgccgccgc
agccgtcgttcgggtgcggacaatgcggaggactccgaggcgtccggcgccgcgggcgac
cgcgccgacgagtccggcgacgatgccgacacggccgacgccgaggatgcatccgatgac
gacgactccggtgattcctcgtcgactcgccgccgccgtcgccggcgccgtcgcaaaggt
ggcggcgaacccgatgaggcgtctcccgacgatccgccgaacacggtggtgcacgagcgc
gagccgcgcagcaagcgggcacgcgacgaggtgcagggcatctcggggtcgacccgactc
gaagccaagcgtcagcgccggcgcgacgggcgcgatgccggccggcgtcgtccgccgatc
ctgaccgagtcggagttcctggcgcgccgtgaggcggtcgaccgcgtcatggtcgtccga
gagcgcagcgcgaacagccgcatctccggcaacgacgggcacgaacacgccgcggtcgag
gactacacgcaggtcgcggtcctcgaggacggtgtcctcgtcgagcacttcgtgacgacc
gcgacgtcgtcgtcgatggtcggcaacatctacctcggacgcgtccagaacgtccttccg
ggtatggaagccgcgttcgtcgacatcggtcgcggacgcaacggcgtgctctacgccggt
gaggtcaactgggacgctgccggactcgacggcggttcgcgcaagatcgagcaggcgctc
aagcccggcgacaacgtgctcgtccaggtcagcaaggacccggtgggtcacaagggcgcc
cgtctgaccacgcagatctccctcgccggccgctacctggtgtacgtgcccggcggttcg
tcgaccgggatcagccgcaagctgcccgacgtcgagcgcaaacgtctcaagcagatcctg
gcgaagctcgtccccgacgaggccggggtcatcatccgcaccgcgtcggagggcgtcagc
gccgaggaactcggtgccgacatcgcccgcctcgagtcgcagtggaagtccatcgacgag
gcggtgacccaggccaagaagggcgggtcgtcgagcccgaagccgctgtacgaggagccc
gacctcctggtgcgcgtcgtccgtgacctgttcaacgaggacttcaagaagctcgtcgtc
gaaggtgacaaggcctggaacctggtcgagggttacgtcagctcggtggcctcggatctc
atggagcgggtcgagaaattcgacaagccgcacgccgacgcgccggattcgttcgtcgtg
caccgcatcgacgagcagctcgcgaaggcgctcgaccgcaaggtgtggctgccctccggc
ggcacgctgatcatcgagcacaccgaggcgatgaccgtcgtcgacgtcaacaccggcaag
ttcaccggctcgggtggcaacctcgaggagacggtgacgcgcaacaacctcgaagccgcc
gaggagatcgtgcggcagatgcggttgcgcgacatcggcgggatgatcatcgtcgacttc
atcgacatggtgctcgagtcgaaccgggatctggtgctccgcaggctcaccgaggcgctc
gctcgtgatcgcacccgtcaccaggtgtccgaggtgacctcgctgggcctcgtccagatg
acacgtaaacgtctgggaaccggtctgctggaagcgttctcgaccacctgcaccgcctgc
agcggtcgaggcatcatcgtgcacgcgaatcccgtcgaggtgaagaccgacgactcttcg
cgtggcgacggtgccggctcgaagcggccccgtcgaggcaagaagaaggccgacgcgcaa
ccggaggcagtcgccccggccgtcgcgcccgctcacaagccggccgagcacccgatgttc
cgggcgatggcggcgcacgcgcacgacgacgaacacggcgaggagtccggcgcgaccacc
gacggtgacaccacgagtcgggtcgaggatgcgccgaaacccgtcgtcgagggttcgtcg
ccgcagcagacggccgacagccgggtggacaccgctgttaccgagccgaccgagaccctg
ccgtatccggtggcgacggaaccggctgagatggattcggctgggacggaatcggctgaa
tccgagcctgcgggggtcgagacggtgcccgagccggccggttcggccaccgacggacag
gccccggcggccgcacggcgtcgtcggcgggtcgtccgtcgtccggcgcagacgaccact
ccgcccgacaccgtggtgatgaccgcggcggatgtcgtggcggagacgccggtgacgacc
tcgggtccggtctccgccgctaactcggaggcggcggtcgcggtacggcgccggccgcgc
aagcgcagcgcgggccgtcccgcgggaccgccaccggccgacgactga
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