Gordonia sp. JH63: GR168_13165
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Entry
GR168_13165 CDS
T10304
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
goj Gordonia sp. JH63
Pathway
goj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
goj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GR168_13165 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goj03400
]
GR168_13165 (recD)
Enzymes [BR:
goj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GR168_13165 (recD)
DNA repair and recombination proteins [BR:
goj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GR168_13165 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
PhoH
AAA_22
RecD_N
SH3_13
UvrD-helicase
NAT10_TcmA_helicase
TraI_hel_assoc_N
Mg_chelatase
Herpes_Helicase
AGT
SRP54
Motif
Other DBs
NCBI-ProteinID:
QHD86216
LinkDB
All DBs
Position
complement(2923908..2925770)
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AA seq
620 aa
AA seq
DB search
MTVSDVQVVEWATGVLAEWNEAGVLAAADVHITDRLVTMCAEPVSETARLGAALAVRAVR
LGSTCLALDRLGELAGDDTADLTIPSSDAVLDALLESPLVAGSKAGPLRPLVVRRSIDGP
LVYLQKYFRQEQTIRETLARRAQTAPVVEADALRAAIAAVYTSPEDGHLQKLAAAVAATR
WTTVLAGGPGTGKTYTVARILAVLDALQGPGLRIGLCAPTGRAAAQLQASVEAESTVPVT
AHAVTLHSLLGWRPGANPRYGRGRTLPHDVIVVDETSMLSMTAMSRLLDAVRPDARVIFV
GDPHQLASVEAGAVLADLVERTDVVGVQGDSGTTTAVSEAALEAVGLDADPELEPEDTDH
LAGGVITLRRQFRFGGGISRVAAAVNAGDADEVLRLVAADDVPNVELVAPDDLDAVRADL
VEWGRALRAAARRADADGALDALDAHRVLCAHREGSWGVRGWSARITEWLGTAGAELAGW
YAGQPILVTANDRQTATFNGDTGVVIADPEGRTQGADGVRVAFRRGGSVRLLHPTQLADV
VSVHAMTIHRSQGSQFRQVTVILPPTGSELLTRELLYTAITRARDHVRIVGTPEVLAAAV
DRRVQRASGLRSAVTPFDRS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgtccgacgtccaggtggtggagtgggccaccggtgtgctcgccgagtggaac
gaggccggagtgctcgccgccgcggacgtgcacatcaccgaccgtctcgtgacgatgtgc
gccgagccggtgtccgagaccgcgcgtctcggcgccgcgctggcggtccgtgcggtgcgg
ctcggttcgacgtgcctcgcgctggaccgtttgggcgagctggccggcgacgacaccgcc
gacctcaccatcccgtcgtccgatgcggtgctcgacgcactgctcgagagcccgctcgtc
gccggcagcaaggcgggtccgttgcgtccgttggtggtgcgacggtccatcgatgggccg
ctggtgtacctccagaagtactttcggcaggaacagacgatccgcgagacgctggcccgc
cgcgcacagacggcacccgtggtcgaagccgatgcgctgcgcgctgcgatagccgccgtc
tacacctcgcccgaggacgggcacctgcagaagctggcggcagcggtcgccgcgacccgc
tggaccaccgtcctggcgggcggtcccggcaccggcaagacctacacggtcgcacgcatt
ctcgcggtactggacgccctgcagggacccggcctccgtatcgggctgtgcgcgccgacg
ggccgggcggcggctcagctgcaggcctcggtggaagcggagtcgacggttcccgtcacg
gcgcacgccgtcacgctccactcgttgctcggctggcgcccgggtgccaacccgaggtac
ggccgcgggcggacactgccgcacgacgtcatcgtcgtcgacgagacctcgatgctgtcg
atgaccgcgatgagccgcctgctcgacgcagtccgtccggatgcacgggtgatcttcgtc
ggtgacccgcatcagctcgcgtcggtcgaggccggagcggtgctcgcggatctcgtcgaa
cggacggatgtcgttggggtgcaaggagattcaggaaccacgacggccgtctcggaggcc
gcgctcgaggcggtgggcctggatgccgatcctgaactcgaacccgaggacacggatcat
ctcgccggtggcgtgatcaccctgcggcgccagttccgtttcggcggcggcatctcgcgg
gtcgcggcggccgtgaacgccggtgacgcagacgaagtcctgcgactggtcgccgcggac
gacgtcccgaacgtcgaactcgtggcgcccgacgacctcgatgccgtccgtgccgatctc
gtcgaatggggccgggcgctgcgggcagcggcccgtcgtgccgatgccgacggggcgctc
gacgcgctcgacgcccaccgggtgctgtgcgcgcaccgggaggggtcttggggtgtccgt
ggctggtcggccaggatcaccgagtggctgggcaccgccggcgccgagctggccggatgg
tatgcgggacagcccatcctggtcaccgccaacgaccgccagacggcgacgttcaacggc
gacacgggcgtggtgatcgccgatcccgagggccggacgcagggggccgacggcgtccgg
gtcgccttccgtcgcggcggatcggtgcgactcctgcacccgacgcagctcgccgacgtc
gtgtcggtccacgcgatgaccatccaccgcagccagggcagccagttccgacaggtcacg
gtgatcctcccgcccacgggctcagaactgctcacccgggagttgctgtacaccgccatc
acccgcgcccgcgaccacgtgcggatcgtcgggacacccgaggtgctggccgcggcggtc
gaccgccgcgtgcagcgggccagcggtctgcgatcggcggtgacgccgttcgaccgctcc
tag
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