Gordonia sp. JH63: GR168_13170
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Entry
GR168_13170 CDS
T10304
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
goj Gordonia sp. JH63
Pathway
goj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
goj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GR168_13170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goj03400
]
GR168_13170
Enzymes [BR:
goj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GR168_13170
DNA repair and recombination proteins [BR:
goj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GR168_13170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
AAA_30
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
KdpD
DUF6381
Motif
Other DBs
NCBI-ProteinID:
QHD86217
LinkDB
All DBs
Position
complement(2925767..2929150)
Genome browser
AA seq
1127 aa
AA seq
DB search
MRRPATFDVTADLPDHTTVLEASAGTGKTYAIVGLAARHIAEGVPISEMLLVTFSRAATA
ELRERMRDRVRELLDGLDRPSAAPGHDALLQMLAQGSPDEVATRRRNLARALSDFDASTI
ATTHTFCNRMLEALGFLGERELVYSIVEEVDELTEEVALDLYLRGFWASDTPEFDFTEAQ
SIARDAVRQASVALAPDESESTDGPGADAVAARRVSFASAVRRIVEARKRDARVRTYDDL
QAILQRIVTDPVVGERACERIRNTFTVVLVDEFQDTDPLQWDILRRCFHGHRRLILVGDP
KQSIYGFRGAEVLSYLAAVSSADTLQALDVNRRSDGALVDALGHLYGEAALGHPGIVVHP
VSAAHPGSRLDGRPPLRIRAFLRTDFTSRNAYNLPAVKDVRDRIAVDVADDIAQTLAQGA
RLEVDGTSRPVDPGDIAILVRLNSTIEPLQRELAERGINSVIGSGVNVFSTTAAQHWLWV
MRAVEQPSRADRVRLAALTTLLGWSIEKVATAGEPEVAELGAELASLGRVFVQGGFAAMA
QRLLDSHGVAARVLATENGERILTDLLQVSALCNKHVVETSAGVSGLVEWLAERIADTSA
RQRYEDQSRRLDRDTQAVQIMTVHASKGLQFPIVYVPYGWDGTWIGDRGNITYHDESGTR
RLDVGGGHAPGRAARRKRYAEETAGEDLRLLYVALTRAQSQVVAWWAPSMNTTSGPLHRL
IFGRDTATRIPSETGESVWSVAPDVPIPDDDATCVGVLRTLTGRDAAISVEPAGRIEAGA
VAAPPHADVETATLGVARFRRAIDQEWRRTSYSAIVADVAHGAPGGPAGSVVATGSDPAD
DILGDEPAADPVELDEPPAEGHRAGTPSLMNGLPYGAAFGTLVHEVLEYVDTSAPDIETH
VRELCSRALGVLPADIDADVLVAALVGVLTTPLGFGDLWGVEPGDRLAELDFELPLGPPD
RTPGARGATPGVFAELLDRHLPDDDPLRDYVDHLRELPDREMRGFLTGSIDSVLRTPDGR
YVVVDYKTNRIRAGDLVVEDFDTASMAGEMIAAHYPLQAMLYSVALHRYLRWRVLGYDPV
RHLGPVQYHFVRGMAGPGTPPGCGVFEWDLPADLILALSDALAGASR
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
gtgagacggccggccaccttcgacgtcaccgccgacctgccggatcacaccacggtcctg
gaggcgagcgccggaaccgggaagacctacgccatcgtcggactcgcggcccggcacatc
gccgagggtgtcccgatctcggagatgctgctggtgaccttcagccgggccgcgaccgcc
gagctgcgcgaacgcatgcgagaccgtgtgcgcgagttgctcgacgggctcgaccgtccc
agtgccgcccccggccacgacgcgctgctgcagatgctggcgcagggatcaccggacgag
gtcgccacccgtcgtcgcaatctcgcccgcgctctgagcgacttcgacgcgtcgacgatc
gcgaccacccacacgttctgcaaccgcatgctggaggcgctggggttcctgggtgagcgt
gaactggtctactcgatcgtcgaagaggtcgacgaactgaccgaagaggtggcgctggac
ctctacctgcgcggtttctgggcaagcgacacaccggaattcgacttcaccgaggcgcag
tcgatcgcccgcgacgcggtgcgccaggcgtcggtcgcgctggcgccggacgagtccgag
tcgaccgacgggccgggtgccgatgcggtggccgcccgtcgggtgagtttcgcgtccgcg
gtccgccgcatcgtcgaggcgcgcaaacgtgatgcgcgcgtacggacctacgacgacctg
caggccatcctgcaacgcatcgtgaccgacccggtggtcggcgagcgcgcgtgcgaacgt
atccgcaacaccttcaccgtggtcctggtcgacgagttccaggacacggacccgttgcag
tgggacatcctgcgtcggtgtttccacggccatcgccgactcatcctcgtcggcgacccc
aaacaatcgatctacgggttccgcggtgccgaggtcctcagctacctcgccgcggtgtcc
tcggccgacaccttgcaggcgctcgacgtgaaccggcggtctgacggcgcgctcgtcgac
gccctcggacatctgtacggcgaagcggcgctgggacatccgggcatcgtggtacatccg
gtctcggcggcacacccgggcagccggctcgacggtcgtccgccgctacgcatccgcgcg
ttcctgcgcaccgacttcacgtcccgtaacgcctacaacctacccgcggtgaaggacgtc
cgcgaccggatcgcggtcgatgtcgccgacgacatcgcgcagaccctcgctcagggcgct
cgactcgaggtcgacggaacctcccgcccggtggatccgggtgacatcgcgatcctggtg
cggctcaacagcaccatcgagccgctccagcgggaactcgccgagcgcggcatcaactcg
gtcatcgggtcgggggtcaacgtgttctccacgaccgcggcccagcactggctgtgggtg
atgcgtgccgtcgaacaaccctcccgtgcggaccgcgtgcgattggcggcgctcacgacc
ctgctcggctggtcgatcgagaaggtggccaccgcaggcgaacccgaggtcgccgagctc
ggggccgaactggcctcgctgggacgggtgttcgtgcagggcgggttcgccgcgatggcg
cagcgcctgctcgactcgcacggtgtcgccgcgcgcgtcctggccaccgagaacggtgaa
cgcatcctcaccgatctcctgcaggtgtccgcgctctgcaacaagcacgtggtcgagacc
tcggcgggggtcagtggcctcgtcgagtggctggccgagcggatcgccgacacgtccgcg
cgccagcgatacgaagaccagagtcgacgactcgaccgcgacacccaggccgtccagatc
atgaccgtgcatgccagcaagggcctgcagttcccgatcgtctacgtgccctacggctgg
gacgggacgtggatcggcgaccgcggcaacatcacgtaccacgacgagtcgggtacccgg
cgtctcgatgtcggtggcgggcatgcgcccggccgcgcggcgcggcgcaagcggtacgcc
gaggagacggccggcgaagacctccggctgctctacgtcgcgctgacgcgggcgcaatcg
caggtcgtggcgtggtgggcgccgtcgatgaacaccacgagcgggccgctgcaccggctg
atcttcgggcgcgacaccgcgacccgaatcccctccgagaccggcgaatcggtgtggtcg
gtcgcccccgacgtccccatacccgacgacgacgccacgtgcgtcggcgtcctgcgcacc
ctgaccgggcgcgatgccgcgatctcggtcgagcccgccggccggatcgaggccggtgcg
gtggcggccccgccgcacgccgatgtcgagacggcgaccctcggggtcgcgcggttccgg
cgcgccatcgatcaggaatggcgtcgtacgtcgtactcggccatcgtcgccgacgtcgcg
cacggcgcacccgggggccccgccggttctgtcgtcgccaccggcagcgatccggccgac
gacatcctcggtgacgagccggccgccgacccggtcgagctcgacgagccgcccgccgag
gggcaccgagcgggaacgccgtcgctgatgaacgggctgccctacggtgcggcgttcggc
accctggtgcacgaggtcctcgaatacgtcgacacctcggcgcccgacatcgagacccat
gtgcgcgaattgtgttcgcgcgcactcggggtcctgccggccgacatcgacgccgacgta
ctggtcgccgcgctcgtcggcgtcctcaccacgccactcggtttcggcgatctctggggc
gtcgagccgggagatcgcctcgccgagctcgacttcgagctcccgctggggccgccggat
cgcacgcccggcgcccgtggggcgacgccgggggtgttcgccgaactcctggaccggcat
ctgcccgacgacgatccgttgcgtgactacgtcgatcacctccgcgagctccccgatcgt
gaaatgcgcggcttcctgacgggcagcatcgactcggtgctgcgcaccccggacggccgc
tacgtggtcgtcgactacaagaccaaccgcatccgggcgggggacctggtcgtcgaggac
ttcgacaccgcgtctatggcaggcgagatgatcgccgcccactatccgctgcaggcgatg
ttgtattcggttgcgctgcataggtatctgcgctggcgcgtcctcggctacgatccggtc
cggcatctcggcccggtgcagtaccacttcgtgcgcgggatggccgggccgggcacgccg
cccggttgcggcgtgttcgagtgggatctgcccgcagacctgatcctcgcattgtccgat
gcactggcgggagcgtcccgatga
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