Gordonia sp. JH63: GR168_15005
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Entry
GR168_15005 CDS
T10304
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
goj Gordonia sp. JH63
Brite
KEGG Orthology (KO) [BR:
goj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
goj03016
]
GR168_15005
Enzymes [BR:
goj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GR168_15005
Transfer RNA biogenesis [BR:
goj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GR168_15005
Prokaryotic type
tRNA splicing ligases
GR168_15005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QHD86538
LinkDB
All DBs
Position
complement(3372640..3373845)
Genome browser
AA seq
401 aa
AA seq
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MPTKVSPKVLNYASHVDDNTLTQAAETARLPFVHPHIALMPDAHFGKGSAVGTVIPTTGA
VIPAAVGVDIGCGMIAVQTRLRAADIDGMDLGRLRRTIEDAIPLSPGNYNRGLDRFEFTR
PRIDALAEQATKDGVDLSHSPKWREQLGSLGGGNHFIELCLDEGDVVWLFLHSGSRGVGN
KIAQKHIKIAQRLCRQWWIKLPNADLAYLPQGAPELTAYLRDLAWAQRFAFENRAEMMDR
FVEVFGKWFADNASGGVVEETESLEVDRINCHHNYTVRETHAGQDVWLTRKGAIDAHEGV
RGVIPGSMGTRSYVVRGKGNPAGLCSAPHGAGRRFSRSEARRRFTADDLAARMAGIEYRH
GEQWVDEIPDAYKDIDQVMADAVDLVDIEHTLRQILNVKGT
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccaaggtgtcgcccaaggtgctgaactatgcatcgcacgtggacgacaacacc
ctgacccaagcggccgagaccgcccggttgccgttcgtgcacccgcacatcgccctcatg
cccgacgcacacttcgggaagggctccgcggtgggcaccgtcatcccgacgaccggcgcg
gtgattcccgcggccgtcggcgtcgacatcggctgcggcatgatcgcggtgcagacgcgc
ctgcgcgccgcggacatcgacggaatggacctcgggcgactgcggaggacgatcgaggac
gcgatcccgctgtcgcccggcaactacaaccgcggtctggaccggttcgagttcacccgg
ccacgcatcgatgccctcgccgaacaggcgacgaaagacggtgtcgacctgtcacattcg
ccgaagtggcgggagcagctgggctcgctcggcggtggcaaccacttcatcgagctgtgc
ctcgacgagggcgacgtggtgtggctgttcctgcactcgggttcgcggggcgtcggcaac
aagatcgcgcagaagcacatcaagatcgctcagcggttgtgccgccagtggtggatcaaa
ctgccgaacgccgatctcgcgtacctgccgcagggggccccggagctgaccgcctatctg
cgggatctggcctgggcgcagcggttcgcgttcgagaaccgcgcggagatgatggaccgt
ttcgtcgaggtgttcgggaagtggttcgcagacaacgcctccggcggcgtcgtcgaggaa
acggaatccctggaggtggaccggatcaactgccaccacaactacaccgtgcgggagacg
cacgcgggccaagacgtctggctcacccggaagggtgcgatcgacgcccatgagggcgta
cggggcgtcatcccgggttcgatgggtacacggtcgtatgtggtgcgcggcaaggggaat
cccgcgggcctgtgctcggcgccgcacggtgccggccggcggttctcgcggagcgaggcg
cggaggcggttcaccgccgacgatctcgccgcccggatggcagggatcgagtaccgtcac
ggcgagcagtgggtcgacgagatcccggacgcgtacaaggacatcgatcaggtcatggcc
gacgccgtcgatctggtggacatcgagcacaccctgcgacagatcctcaacgtcaagggg
acgtga
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