KEGG   Gordonia sp. JH63: GR168_15515
Entry
GR168_15515       CDS       T10304                                 
Name
(GenBank) HU family DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
goj  Gordonia sp. JH63
Brite
KEGG Orthology (KO) [BR:goj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:goj03032]
    GR168_15515
   03036 Chromosome and associated proteins [BR:goj03036]
    GR168_15515
   03400 DNA repair and recombination proteins [BR:goj03400]
    GR168_15515
DNA replication proteins [BR:goj03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    GR168_15515
Chromosome and associated proteins [BR:goj03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    GR168_15515
DNA repair and recombination proteins [BR:goj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      GR168_15515
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HC2
Other DBs
NCBI-ProteinID: QHD86633
LinkDB
Position
complement(3478447..3479076)
AA seq 209 aa
MNKAELIDELTKKLDADRKTATEAVELVVDTIVRAVNKGESVTITGFGVFEKRKRAPRVA
RNPRTGETVKVRATSVPAFRPGAQFKAVVAGKQKLSATGPAVKRGSGATTTAAKKAAPAK
KTAAKKTTAAAKKTTAAKKAPAKTTAAKKTTTAAKKAPAKTTAAKKTTTAAKKAPAKKAA
PAKKATAAKKAPAKKTAAKKTAAKKTTRR
NT seq 630 nt   +upstreamnt  +downstreamnt
atgaacaaggcggagctcattgatgagctgaccaagaagctcgacgcggatcgcaagact
gcgactgaagccgtcgagctcgtcgtcgacacgatcgtgcgcgcggtcaacaagggcgag
agcgtgacgatcaccggcttcggcgtattcgagaagcggaagcgcgcaccgcgcgtcgcc
cgtaacccgcgcaccggcgagaccgtcaaggtccgcgcgacctcggtgccggcgttccgt
ccgggcgctcagttcaaagccgttgtggcgggcaagcagaagctgtccgcgaccggtccg
gctgtgaagcgcggaagcggagccaccaccacggcagccaagaaggctgcgccggcgaag
aagaccgccgccaagaagacgaccgccgccgccaagaagaccaccgcggcgaagaaggcc
ccggccaagaccacggcggccaagaagaccaccaccgcggcgaagaaggctccggccaag
accacggcggccaagaagaccaccaccgcggcgaagaaggctccggccaagaaggcggcg
ccggcgaagaaggccaccgccgcaaagaaagctccggccaagaagactgccgcgaagaag
accgcggcgaagaagaccacccgtcgctga

DBGET integrated database retrieval system