Gordonia insulae: D7316_00298
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Entry
D7316_00298 CDS
T05722
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gom
Gordonia insulae
Pathway
gom03030
DNA replication
gom03430
Mismatch repair
gom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D7316_00298 (dnaE1)
03430 Mismatch repair
D7316_00298 (dnaE1)
03440 Homologous recombination
D7316_00298 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gom03032
]
D7316_00298 (dnaE1)
03400 DNA repair and recombination proteins [BR:
gom03400
]
D7316_00298 (dnaE1)
Enzymes [BR:
gom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D7316_00298 (dnaE1)
DNA replication proteins [BR:
gom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D7316_00298 (dnaE1)
DNA repair and recombination proteins [BR:
gom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D7316_00298 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AZG43729
UniProt:
A0A3G8JH06
LinkDB
All DBs
Position
291212..294766
Genome browser
AA seq
1184 aa
AA seq
DB search
MSNSFVHLHNHTEYSMLDGAAKVAPLFAEAKRLEMTAIGMTDHGNMFGASEFYNTAIKND
IKPIIGIEAYIAPGSRFDTKRVTWGTRDQKSDDVSGSGAYTHMTMVAENAAGLRNLFKLS
SLASIEGQLGKWSRMDADLIAQYADGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQEI
FGKDNFYLELMEHGLEIERRVRDGLLDIGRKLGIKPIVTNDCHYVTKDHAASHEALLCVQ
TGKTLSDPTRFKFDGDGYYLKSAAEMREQWDSIVPGACDNTLEIGERVQSYADVFTHHDR
MPIFPVPEGETQQTWLRKEVAGGLQRRFPDAPVPEDYLNRANYELDVIIQMGFPAYFLVV
GDLIRHALEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPERVSMPDIDI
DFDDRRRGDMVRYATERWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADRITKA
LPPPIMAKDISVSGITDPQHERYNEASEVRALIETDPDVKRIYDTALGLEGLIRNAGVHA
CAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALENI
QSNRGIDLDLDTLPLEDPKTYELLARGDTLGVFQLDGGAMRELLKMMQPTGFEDIVAVLA
LYRPGPMGVNAHTDYAKRKNGLQQIRPIHPELEEPLKEILSETYGLIVYQEQIMQIAQKV
AGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRTNGFSQAAITALWDTVLPFAGYAFN
KSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDVN
ESQRNFAAVGKDIRFGLAAIRNVGTGVVSSILAAREEKGKFTNFSDYLGKIDVTACSKKV
TESLIKAGAFDSLSHPRKGLFLVHTDAVESVIGTKKAEAIGQFDLFGGAGADDAAVDNSL
ADVFAVKVPDEEWDSKHKLALEREMLGLYVSDHPLAGVAHAIAAQTDTSITALLEGTVPD
GAQITIGGIISSVNRRVNKKGEPYAVVTLEDMVGGVEVYFFPRSFQVYGLDIVADNIVLI
KARVNVRDDSTMISANDLAVPDLAVVGTAKPVALTLSARSCTPDRVQALKQVLTRHPGTA
DVHVTLVSEQNSTVLRLTEALRVTPSSALMGDLKALLGPSCMSG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcgttcgttcacctgcacaaccacaccgagtactccatgctggacggtgcg
gccaaggtggcgccgctgttcgccgaggccaagcgtctcgagatgaccgcgatcggcatg
accgaccacggcaacatgttcggcgcgagcgagttctacaacaccgccatcaagaacgac
atcaagccgatcatcggcatcgaggcctatatcgctcccggatcgcggttcgacaccaag
cgcgtcacgtggggtacccgtgaccagaagagcgacgacgtgtcgggcagcggcgcctac
acgcacatgacgatggtcgccgagaacgcggccggcctgcgcaacctgttcaagctgtcg
tcgctcgcctccatcgagggccagctcggcaaatggtcccggatggatgccgacctcatc
gcgcagtacgccgacgggatcatcgccaccacgggctgcccgtcgggtgaggtgcagacc
cgcctgcgtctggggcacgagcgcgaggccctcgaggccgcggcgaagtggcaggagatc
ttcggcaaggacaacttctacctcgagctgatggagcacggcctcgagatcgagcggcgg
gtgcgcgacggtctgctcgacatcggccgcaagctcggcatcaagccgatcgtcaccaac
gactgccactacgtgaccaaggaccacgcagccagtcacgaggccctgctgtgtgtgcag
acgggcaagaccctctcggatccgacgcgcttcaagttcgacggcgacggctactacctg
aagtccgccgcggagatgcgcgagcaatgggattcgatcgttcccggtgcgtgcgacaac
accctcgagatcggcgaacgggtgcagagttacgccgacgtcttcacccaccacgaccgg
atgcccatcttcccggtgcccgagggggagacgcagcagacctggctgcgtaaagaggtc
gcgggcggcctgcagcgtcgcttcccggacgcacccgtcccggaggactatctgaatcgg
gcgaactacgagctcgacgtcatcatccagatggggttcccggcctacttcctcgtcgtc
ggcgacctgatccggcacgcactggaggtcggcatccgcgtcggaccgggccgaggttcg
gcggccggatcgctggtggcgtgggccctcggtatcaccaatatcgacccgatcccgcac
ggcctgctgttcgagcgattcctcaaccccgagcgtgtgtcgatgcccgacatcgacatc
gacttcgacgaccgccggcggggcgacatggtccgctacgccaccgaacgttggggcagc
gacaaggtcgcccaggtcatcaccttcggcaccatcaagaccaaggccgccatcaaggac
tcggcccgcgtgcagttcggccaacccggcttcgccatcgccgaccggatcaccaaggcg
ctgccgccgcccatcatggccaaggacatctcggtgtccggtatcaccgatccgcagcac
gagcgctacaacgaggcctccgaggtccgtgcactgatcgagaccgaccccgacgtcaag
cggatctacgacaccgccctcggtctcgagggcctgatccgcaatgcaggcgtgcacgcc
tgtgcggtgatcatgtcgtcggagccgctcaccgacgccatcccggtgtggaagcgcgcc
caggacggcgccatcatcaccggttgggactacccgtcgtgtgaggccatcggcctgctg
aagatggacttcctcgggctgcgcaacctgacggtcatcggtgacgcgctggagaacatc
cagagcaaccgcggcatcgacctcgacctcgacacgctgccgctcgaggacccgaagacc
tacgaactcctcgcgcgcggcgacacactcggtgtgttccagctcgacggcggcgcgatg
cgcgaactgctgaagatgatgcagcccaccggcttcgaggacatcgtcgcggtgctggcg
ctctaccggccgggtccgatgggcgtgaacgcgcacaccgactacgccaaacgcaagaac
gggctgcagcagatccgaccgatccatcccgagctcgaggagccgctcaaggagatcctc
tccgagacctacggcctgatcgtgtatcaggagcagatcatgcagatcgcgcagaaggtc
gccgggtactcgctcggtcaggccgacctgctgcgtcgcgccatgggcaagaagaagaag
gagatcctcgacgaggcctacgacgggttcgccgaggggatgcgcaccaacgggttctca
caagcggcgatcacagcgctgtgggacaccgtgctcccgttcgcgggatacgcgttcaac
aagtcgcacgccgccggctacggactcgtctcgttctggaccgcctacctcaaggcgaac
tatcccgccgagtacatggccgggctgctcacgtccgtgggcgacgacaaagacaaggcc
gcgatctacctcgcggactgccgcaagctggggatcaccgtcctgccgcccgacgtcaac
gagtcgcagcgcaacttcgccgcggtcggcaaggacatccggttcggcctcgccgccatc
cgcaacgtgggcacgggcgtggtgtcctcgatcctggccgcgcgcgaggagaaggggaag
ttcaccaatttctccgactacctcggcaagatcgacgtcaccgcctgcagcaagaaggtc
accgaatcgctcatcaaggccggtgccttcgattcgttgagccacccgcgcaagggcctg
ttcctggtccacaccgacgccgtcgaatccgtcatcggcaccaagaaagccgaggccatc
ggccagttcgacctcttcggcggggccggcgcggacgatgcggccgtggacaacagcctc
gccgatgtgttcgcggtcaaggtgccggacgaggagtgggactccaagcacaagctggcg
ctcgagcgcgagatgctcggcctctacgtctccgatcaccccctggccggcgtggcgcat
gccatcgcggcccagaccgacacgtcgatcaccgctctgctcgagggcacggtgcccgac
ggtgcgcagatcaccatcggcggcatcatctcgtcggtgaaccggcgcgtgaacaagaag
ggtgagccctacgcggtcgtcaccctcgaggacatggtcggtggcgtcgaggtctacttc
ttcccccggtcgttccaggtctacggtctcgacatcgtggccgacaacatcgtgctcatc
aaggcgcgcgtgaacgtccgggacgacagcacgatgatcagcgccaacgatctggccgtt
cccgatctggccgtggtcggcaccgcgaaaccggttgcgctgacactgagcgcgcgatcg
tgcacacccgaccgcgtacaggccctcaaacaggtcctcacccggcacccgggcaccgcg
gacgtgcacgtgaccctcgtcagcgagcagaactcgacggtcctgcggctcaccgaggcg
ctgcgcgtcacgccgagttcggccctgatgggcgacctgaaagcgctgctcgggcccagc
tgtatgtccggctga
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integrated database retrieval system
