Gordonia insulae: D7316_00571
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Entry
D7316_00571 CDS
T05722
Symbol
rng
Name
(GenBank) Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gom
Gordonia insulae
Pathway
gom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7316_00571 (rng)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gom03019
]
D7316_00571 (rng)
03009 Ribosome biogenesis [BR:
gom03009
]
D7316_00571 (rng)
Enzymes [BR:
gom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D7316_00571 (rng)
Messenger RNA biogenesis [BR:
gom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D7316_00571 (rng)
Ribosome biogenesis [BR:
gom03009
]
Prokaryotic type
rRNA processing factors
D7316_00571 (rng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
AZG43991
UniProt:
A0A3G8JFQ7
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All DBs
Position
598115..601495
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AA seq
1126 aa
AA seq
DB search
MTDNGSPTDANAASESAEEFPSRLRVHALARTLGLTSRQVLAHLSELGVETRSPQSSIDR
EVAQAVADRVREHVPVDEAAVEAVEDAADTAGTDESSSTAAAEPSADAADESPASAPTTA
ESPDELAAQATGDQPAEEQPAQQASTPEPSAPESVGERAAETEVPTLFSSVEDARHHPIV
PSAESAIDQPLFLSPQAVEPAPRKSRPARTETDVEGGSDTEAGATDTDSSTDDDSSGDGD
RSSRRRRRGRRGRGRGRGDQGEGGGEDATSTSDNDSTDDGDDTSDERSGSRPSGKKGKKS
GGTKDSGTKDSDTKDSGGKDGGGKDGGPNEKDAKRGADKNRDQSTDADSEDDSSAESADD
TDDESGSDDNDQGSSKRRRRRRRRKGGADAEDASPDDPPNTVVHEREPRSKRARDEVQGI
SGSTRLEAKRQRRRDGRDAGRRRPPILSESEFLARREAVDRVMVVRERSANSAIAGDAPS
NGHDHAVPVEDYTQVAVLEDGVLVEHFVTTETSSSMVGNIYLGRVQNVLPGMEAAFVDIG
RGRNGVLYAGEVNWDAAGLDGGSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAG
RYLVYVPGGSSTGISRKLPDVERKRLKSILGKLVPDDAGVIIRTASEGVSAEELGADIAR
LEGQWKEIDVAVGKAKKGGSTAPQALYEEPDLLVRVVRDLFNEDFKKLVVEGQKAWDLVE
RYIEAVAPDLMDRVERFAKANADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEA
MTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRD
LVLRRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTSCTHCGGRGIIVHAN
PVEVRQDDSGPSDGGSKRSRRNRRKAEPAAAPEPQKPAHNPAEHPMFRAMAAHAHEDDHE
HGHEHQDGHEDTAGHTAEDRSTDGERPAAAKTPAVAEAADVAPSEPAASTEPAASAEPTT
PTEPAQERTERESAPSEPAAASTEPAAEPAPAPKRRRRVVRQAAAPPSVSEPVVLTADGD
SSSAAQPVTTFGPVSGATSQEAAVAVRRRPRRRTAGRPAGPPPAEQ
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaacgggtcgccgactgacgcgaacgcagcgtcggaatcggcggaggaattc
cccagcaggcttcgtgtgcatgctctggccaggacattgggtctgaccagccggcaagta
ctcgcgcatctgtccgaattgggcgtggagacgcgaagcccgcaatccagcatcgaccgc
gaggtcgcgcaggctgtcgcggatcgtgtccgtgaacacgtgccggtcgacgaggccgcc
gtcgaggcggtcgaggacgcggcggacaccgcggggaccgacgagtcgtcatcgacggca
gccgccgagccgtcggcggacgcggccgacgaatccccggcatccgcaccgacgactgcg
gagtcgcccgacgaactggcggcgcaggccaccggcgaccagccggccgaagagcagccc
gcccagcaggcatcgaccccggaaccatccgcaccggaatccgtcggggagcgcgccgcc
gagaccgaggtgccgaccctgttctcgtccgtggaggacgcgcggcatcatccgatcgtg
ccgagcgccgaatcggcgatcgaccagccgttgttcctgtccccgcaggccgtggaaccg
gccccgcgtaagtcgcgtccggcccgaaccgagaccgacgtcgagggcgggtccgacacc
gaggccggcgcaaccgacaccgacagctccaccgacgacgattcgtccggcgacggggat
cgatcctcccgccgtcgacgccgaggtcgccgtgggcgtgggcgtggccgtggtgaccag
ggcgagggcggtggcgaggacgcgacctcgacctccgacaacgactccaccgacgacggt
gacgacacctccgacgagaggtcgggatcacgcccgtccggcaagaagggcaagaagtcc
ggcggcaccaaggacagcggcaccaaggacagcgataccaaggacagcggcggcaaggac
ggcggcggcaaggacggcggtcccaacgagaaggacgccaagcggggcgccgacaagaac
cgggaccagtcgacagacgcggactccgaggacgactcgagcgccgaatccgccgacgac
accgacgacgagtcggggtccgacgacaacgaccagggctcgtcgaagcgccgtcgtcgc
cgtcgtcgtcgcaagggcggagccgacgccgaggacgcatcgccggacgatccgccgaac
accgtcgtccacgagcgcgagccgcgcagcaagcgggcccgcgacgaggtgcagggcatc
tcgggttccacgcggctagaggccaagcggcagcgccgccgggacggtcgcgatgccggc
cgccgtcggcccccgatcctgagcgagtcggagttcctcgcccgtcgtgaggccgtcgac
cgggtgatggtcgtccgcgagcggagcgcgaacagtgccatcgccggggacgcgccgtcg
aacggacatgaccacgcggtgccggtggaggactacacgcaggtcgcggtattggaagac
ggcgtgctcgtggagcatttcgtgaccaccgagacatcgtcgtcgatggtcggcaacatc
tacctggggcgcgtgcagaacgtgctgcccggcatggaggcggcgttcgtcgacatcggc
cgcggtcgcaacggcgtgctgtacgccggcgaggtcaactgggacgccgcaggtctcgac
ggcgggtcacgcaagatcgagcaggccctcaagcccggcgacaacgtgctggtccaggtc
agcaaggacccggtcggccacaagggtgcgcgcctcaccacccagatctcgctcgccggc
cgctatctcgtctacgtgcccggtggttcgtccaccgggatcagccgcaagctgcccgac
gtcgaacgcaagcgactcaagagcatcctcggcaagctcgtccccgacgatgcaggtgtg
atcatccgcaccgcgtccgagggggtcagtgccgaggaactcggtgcggacatcgcccgc
ctcgagggacagtggaaagagatcgacgtcgccgtcggcaaggccaagaagggcggttcc
actgctccgcaggcgctctacgaggagcccgatctcctggtccgggtggtgcgcgacctg
ttcaacgaggacttcaagaagctcgtcgtcgagggtcagaaggcatgggatctcgtcgag
cgctacatcgaggcggtcgcaccggatctgatggatcgggtggagcggttcgccaaggcc
aacgccgacgcgccggattcctttgtggtgcaccggatcgacgagcagctcgcgaaggcg
ctcgaccgcaaggtctggctgccgtcgggcggcacgctgatcatcgaacacaccgaggcg
atgaccgtcgtcgacgtcaacaccggcaagttcaccgggtcgggtggcaacctcgaggag
acggtcacccgcaacaacctggaggcggccgaggagatcgtgcggcagatgcgcctgcgc
gacatcggcggcatgatcatcgtcgacttcatcgacatggttctcgagtccaaccgtgat
ctggtgctccggcggctcaccgaggcgctggcccgtgaccgtacccgtcaccaggtatcc
gaggtcacctcgctcggcctggtgcagatgacccgtaagcgactcggaaccggtctgctg
gaggcgttctcgacgtcctgcacgcactgcggcggtcgcgggatcatcgtgcacgccaac
ccggtggaggtccgccaggacgattccggtccgtccgacggcggttccaagcggtcgcgg
cgcaatcgtcgcaaggccgaaccggcggcggcgcccgagccgcagaagcccgcgcacaat
ccggcggagcacccgatgttccgtgcgatggcggcgcacgctcacgaggacgaccacgag
cacggtcacgagcaccaggacggccacgaggacacggctgggcacaccgccgaggatcgg
tcgaccgacggcgaacgtccggctgccgcaaagactcccgcagtcgccgaggccgcggat
gtcgcgccgtccgagcccgctgcgtcaaccgagcccgctgcgtcagccgaaccgaccacg
ccgaccgagcccgcgcaggagcgaaccgaacgcgagtccgcgccgagcgaacccgcggcc
gcgtcgaccgagcccgcagccgagccggctccggcgccgaagcgtcgacggcgtgtggtc
cgtcaggcggcggcgccgccgagcgtctccgagccggtggtgttgaccgccgatggtgac
agttcgtcggctgcgcagccggtcaccacgttcggtccggtgtccggtgcgacgtcgcag
gaggccgccgtcgcggtccgacgccgacctcgccgtcggacggccggacgaccggcggga
cccccgcctgccgaacagtga
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