Gordonia insulae: D7316_01229
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Entry
D7316_01229 CDS
T05722
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gom
Gordonia insulae
Pathway
gom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D7316_01229 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gom03400
]
D7316_01229 (recB)
Enzymes [BR:
gom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D7316_01229 (recB)
DNA repair and recombination proteins [BR:
gom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D7316_01229 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AZG44643
UniProt:
A0A3G8JI02
LinkDB
All DBs
Position
complement(1311564..1314902)
Genome browser
AA seq
1112 aa
AA seq
DB search
MTATPTPFDVTAPLPAGTTVLEASAGTGKTFAIVGLGARFIAEGVPIDKLLLVTFSRAAT
AELRERMRDRVAELVAALSDPAACGAHPDPLVRYLADGVPADVALRRERLARALSDFDAS
TIATTHTFCNRMLDALGFLGERELVHEIVEDVDDLVDEAALDLYIRGYAGSDAPDIAPAD
ATAIARDAVRQPAAALAPSSADLGGSTGATATVAIRRARFAARIREIIEDRKRLSRLRTY
DDLQMILFRIVTDPVVGEAACARIRASFEAVLVDEFQDTDPQQWEIVRRCFHQHRTLVLV
GDPKQSIYGFRGAEVLAYLQAVTSADALRALDVNRRSDGALVDALGRLYGGAELGHPQIL
VHDVTAARAGSRIRGVPPVRLRAFPRAAFPVTGASGFASVGDVRDRVIADVAADIAGLLA
SNTTIEVDGVTRPVEPGDVAVLVTLNKTVAPLQQQLQEHGVTAVIGSGTSVFHTAAARHW
LSVIRAIEQPARSDMVRLAALSPLIGWSAERLAADDGADTAELATMLQGLGRVFDEGGFA
AMSQRLMSRMSVAERVLALRDGERALTDLVQVASLCNAEVMDSDCGLSALGEWLADRIAD
TTRWQRHEDQTRRLDRDTQAVQIMTVHRSKGLQFPIVYVPFAWDGARNSNRATFTFHDDA
GERVLDVGGKEAPGYRSRWARHETESAGEELRLLYVALTRAQSQVVLWWAPAYFTRISAL
HRMLFGRKDGSSAVPESFDVPDEDTCGRVLTGYATADGAIRVEVAGRDGDSRIEPLPPRR
PAEGLGVALFDRSIDQSWRRTSYSAIVAGAGHGHLPLLGSGSEADDDLIADEPVPDVERI
PAETAPASGTPSLMNGMPFGAAFGTLVHETLEYVDTDAPDMAGHVRDLCRTSIERRMVDV
DVDLLAAALVGVLTTPLGFGDLWQIRPRDRLAELDFEFPLTDPRADGSSRSAVSMSAVAD
LMDRHLPADDPLAGYSDRLRELPPQRLRGYLTGSIDSVLRTPDGRFVVVDYKTNRLRPGD
LTAEDFDRDAMATEMIAANYPLQALLYSVALHRYLRWRVRDYRTADHLGPVQYHFVRGMI
GPDTPAGCGVFEWHVPPALVEDVSDLLAEGTS
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgacagccactcccacgccgttcgatgtgacggcaccgctgcccgcggggaccaccgtc
ctcgaggcgagtgcgggtaccggcaagaccttcgcgatcgtcggcctgggcgcacggttc
atcgccgagggcgtgcccatcgacaagctcttgctggtcaccttcagccgggcggccacc
gccgaactccgcgagcgcatgcgtgatcgcgtcgccgaactcgtggccgcactgtccgat
ccggcagcgtgcggcgcacacccggacccgctggtccgatacttggccgacggggtgccg
gccgatgtcgcgctccgccgcgaacgactcgcgcgtgccctctcggatttcgacgcgtcc
accatcgcgaccacgcacaccttctgtaaccgcatgctcgacgcgctgggcttcctgggc
gagcgtgaactcgtccacgagatcgtcgaggacgtcgacgatctcgtcgatgaggcggca
ctcgacctgtacatccggggatacgcgggctccgacgcgccggacatcgcgccggccgac
gccaccgcgatcgcccgcgacgccgtacgccagcccgccgccgcgctcgcaccctcgtcg
gccgacctcggcggctccaccggagcgaccgcgaccgtcgcgatccggcgcgcccggttc
gccgcgcgcatccgtgagatcatcgaggaccgaaagcggttgtcccgcctgcgaacctac
gatgacctgcagatgatcctgtttcgcatcgtcaccgatccggtggtcggcgaagcggcg
tgcgcacgcatccgtgcgtcgttcgaggcggtgctggtcgacgagttccaggacaccgac
ccacaacagtgggagatcgtgcggcgctgcttccaccagcaccgcacgctggtgctggtg
ggtgatccgaagcaatcgatctacggcttccgcggcgccgaggtcctggcctacctgcag
gcggtgacctcggccgacgccctacgcgccctcgacgtgaaccgccggtccgacggtgcg
ctggtggatgcgctcgggaggctctacggcggtgccgaactcggccacccgcagatcctg
gtgcacgacgtcacggcggcccgcgcgggcagccggattcgcggcgtgccccccgtgcgt
ctgcgggcgtttccgcgggcggcgttcccggtcacgggcgccagcggtttcgcctccgtc
ggcgacgtgcgtgaccgggtgatcgcggacgtcgctgccgacatcgcggggctgctcgcc
tcgaacaccaccatcgaggtcgacggggtgacccggccagtcgaaccgggcgacgtcgcc
gtactggtcaccctcaacaagaccgtcgccccgctccaacagcaactccaggaacacgga
gtgacggccgtcatcgggtcgggcaccagcgttttccacacggcggcggcccggcactgg
ctgtcggtgatccgcgcgatcgaacaacccgcacgctcagacatggtgcggctcgcggcg
ctcagccccctgatcggctggtcggccgagcgtctggccgccgacgacggcgcggacacg
gcagaactcgcgaccatgctgcaaggcctgggcagggtgttcgacgagggtggtttcgcg
gcgatgtcccaacgactgatgagccggatgtcggtggccgaacgggtgctggcactgcgg
gacggcgagcgcgcgctgacggacctggtccaggtggcatcgctgtgcaacgccgaggtc
atggacagcgactgcggactgagtgcactcggcgaatggctcgccgaccgcatcgccgac
accacacgctggcagcgccacgaagaccagacgcgtcggctggaccgtgacacccaggcg
gtgcagatcatgaccgtgcaccgcagcaagggactgcagttccccatcgtgtacgtgccg
ttcgcatgggacggggcacgcaactcgaaccgggcgacgttcaccttccacgacgacgcc
ggcgaacgggtcctcgacgtcggtggcaaggaggcgccgggttaccggtcgcggtgggca
cggcacgagaccgaatcggccggtgaggaactccgactgctctacgtcgcgctcacccgt
gcccagtcccaggtggtgctctggtgggcgcccgcctacttcaccaggatctcggcgctg
catcggatgttgttcggccgcaaggacggttcgtcggcggtcccggaatccttcgacgtc
cccgacgaggacacgtgtggccgggtgctgaccggttatgccaccgccgacggcgcgatc
cgggtggaggtggcaggacgtgacggcgacagccggatcgagccgctgccgccacgacgc
cccgcggagggtctcggcgtcgccctgttcgaccgatcgatcgatcagagttggcgccgc
acatcgtattccgcgatcgttgcgggcgcaggacacgggcacctgccactcctcgggtcc
ggtagtgaggccgacgacgatctgatcgccgacgagccggtgccggatgtcgagcgcatc
ccggcggagactgcacccgcgtcgggaacgccgtcgctgatgaacgggatgccgttcggc
gcggccttcggcacgctcgtccacgagaccctcgaatacgtagacaccgacgccccggac
atggccgggcatgtccgtgacctgtgccgcacgtcgatcgagcgcaggatggtcgacgtc
gatgtcgatctgctggcagcggcactcgtcggtgtcctcaccacgccgctcggcttcggc
gacctgtggcagatccgaccgcgagaccggctggccgagctcgacttcgagttcccgctg
accgacccgcgtgcggatgggtcctcgcgatctgcggtgtcgatgagcgcggtcgccgac
ctgatggacaggcacctgcccgccgacgacccgctcgccggctacagcgatcggctacgt
gagctgccgccgcaacgactccgcggttacctgacgggcagcatcgactcggtgctgcgt
acgccggacggccgtttcgtggtcgtcgactacaagacgaaccggttgcggccgggcgac
ctcactgccgaggacttcgaccgtgatgccatggccaccgagatgatcgccgccaactat
ccgctccaggctctgttgtattccgttgcactgcatcgctatctgcgatggcgggtgcgg
gactaccggacagccgatcatctcggaccggtgcagtaccacttcgtccgcggaatgatc
ggacccgacaccccggccggctgcggcgtgttcgaatggcacgtgccgcccgcgctggtc
gaagatgtctcggatctcctggcggagggcacatcatga
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