Gordonia insulae: D7316_04808
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Entry
D7316_04808 CDS
T05722
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gom
Gordonia insulae
Pathway
gom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D7316_04808 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gom03021
]
D7316_04808 (rpoB)
03400 DNA repair and recombination proteins [BR:
gom03400
]
D7316_04808 (rpoB)
Enzymes [BR:
gom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D7316_04808 (rpoB)
Transcription machinery [BR:
gom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D7316_04808 (rpoB)
DNA repair and recombination proteins [BR:
gom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D7316_04808 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AZG48191
UniProt:
A0A3G8JSV6
LinkDB
All DBs
Position
5183457..5186963
Genome browser
AA seq
1168 aa
AA seq
DB search
MLEGRILALDRQSTSTIPGAPRRASFAKISEPLEVPGLLDLQLDSFEWLVGSPEWRAKAI
ARGDDNPTGGLEDILHELSPIEDFSGSMSLSFSDPHFDEVKASVEECKDKDMTYAAPLFV
TAEFINNNTGEIKSQTVFMGDFPIMTDKGSFIINGTERVVVSQLVRSPGVYFDSNIDKTT
EKTLHTVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEEITERFGFS
EIMMSTLEKDNTANQDEALLEVYRKLRPGEPPTKESAENLLENLFFKEKRYDLARVGRYK
VNKKLGLTANPMVGDSVLTREDIVATVEYLVRLHEADPHVTSYMTVPGGVEVPVEVDDID
HFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFF
GTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEG
PNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDDVQYLTADEEDRYLVAQANTNYALD
GRITDDRVLVRKKGSEVEFVGANEVDYLDVSPRQMVSVATAMIPFLEHDDANRALMGANM
QRQAVPLVRNESPLVGTGMELRAAVDAGDVVVSGKTGVVEEVSADYITVMADDGTRDTYR
MRKFARSNHGTCANQRPIVDEGQRVETGQVLADGPCTENGEMALGKNLLVAIMPWEGHNY
EDAIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVR
IGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVR
VFSRDDDDDLAPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPAEDMPFLPDGT
PVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVASGVPDWASKLPEDMYSAEPNTN
TATPVFDGAREEELTGLLSSTLPNRDGDVMVNGDGKATLFDGRSGEPFPYPVSVGYMYII
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDTD
DEDLERAAANLGINLSRNESATVDDLAN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgttggaaggacgtatcttggcactcgaccgccagtccacctcaaccatccccggcgcg
ccgaggcgcgcgtcgttcgcaaagatcagtgagccactggaggtaccgggacttctcgac
ctccagctcgattccttcgagtggctcgtcggctcccccgagtggcgtgcgaaggcaatc
gcccggggcgacgacaacccgacaggtggcctcgaggacatcctgcacgaactgtccccc
atcgaggacttctccggctcgatgtcgctgtctttctccgacccgcacttcgacgaggtc
aaggcctccgtcgaggagtgcaaggacaaggacatgacctacgcggcgccgctgttcgtc
accgcggagttcatcaacaacaacaccggtgagatcaagtcgcagaccgtcttcatgggc
gacttcccgatcatgaccgacaagggcagcttcatcatcaacggcaccgagcgtgtcgtg
gtgagccagctcgtccgtagtcccggcgtctacttcgactccaacatcgacaagaccacc
gagaagaccctgcacaccgtcaaggtcatcccgggtcgcggtgcgtggctggagttcgac
gtcgacaagcgcgacaccgtcggcgtgcgtatcgaccgcaagcgccgtcagccggtcacc
gtgctgctcaaggccctcggctggacgaacgaggagatcaccgagcgtttcggtttctcc
gagatcatgatgtcgaccctggagaaggacaacaccgccaaccaggacgaggcgctcctc
gaggtctaccgcaagctgcgcccgggcgagccgccgaccaaggagtccgcggagaacctg
ctggagaacctgttcttcaaggagaagcgctacgacctcgcccgcgtcggccgctacaag
gtcaacaagaagctcggtctgaccgccaacccgatggtcggcgattcggtgctcacccgt
gaggacatcgtcgcgaccgtcgaatacctggtgcgactgcacgaggccgatccgcacgtg
acctcgtacatgaccgtccccggcggcgtcgaggtgccggtcgaggtggacgacatcgac
cacttcggcaaccgtcgtctgcgtaccgtcggcgagctcatccagaaccagatccgggtg
ggtctgtcgcggatggagcgcgtcgtgcgtgagcggatgaccacgcaggacgtcgaggcg
atcaccccgcagaccctgatcaacatccgtcccgtcgtggcggcgatcaaggagttcttc
ggcaccagccagctgtcgcagttcatggaccagaacaacccgctgtcgggtctgacccac
aagcgtcgcctgtcggcgctgggccccggcggtctgtcccgtgagcgcgccggcctcgag
gtgcgcgacgtccacccgtcgcactacggccgtatgtgcccgatcgagaccccggaaggc
ccgaacatcggcctgatcggttcgctgtcggtgtacgcgcgggtcaacccgttcggcttc
atcgagaccccgtaccgcaaggtggtcgagggtgtcgtcaccgacgacgtccagtacctg
accgccgacgaggaggaccgctacctcgtcgcccaggcgaacaccaactacgccctcgac
ggtcgtatcaccgacgatcgcgtgctggtgcgtaagaagggctccgaggtcgagttcgtc
ggcgcgaacgaggtcgattacctcgacgtctcgccgcgccagatggtgtcggtcgcgacc
gcgatgatcccgttcctcgagcacgacgacgccaaccgcgccctgatgggtgcgaacatg
cagcgtcaggccgtgccgctggtgcgcaacgagtcgccgctggtcggtaccggcatggag
ctgcgtgccgccgtcgacgccggtgacgtggtcgtgtccggcaagaccggtgtggtggag
gaggtctccgccgactacatcaccgtgatggccgacgacggcacccgcgacacctaccgg
atgcgcaagttcgcccgctcgaaccacggcacgtgcgccaaccagcgcccgatcgtggac
gagggccagcgcgtcgagaccggtcaggtcctcgccgacggtccgtgcaccgagaacggt
gagatggccctgggcaagaacctgctcgtggcgatcatgccgtgggagggccacaactac
gaggacgcgatcatcctgagccagcggctcgtggaggaggacgtgctcacctcgatccac
atcgaggagcacgagatcgacgcccgcgacaccaagctcggtgccgaggagatcacccgg
gacatcccgaacgtctccgacgaggtcctcgcggatctcgacgagcgcggcatcgtgcgc
atcggtgcggaggtccgcgacggcgacatcctggtcggcaaggtcaccccgaagggcgag
accgagctgaccccggaagagcgtctgctgcgtgccatcttcggtgagaaggcccgcgag
gtgcgcgacacctcgctcaaggtcccgcacggtgagaccggcaaggtcatcggcgtccgc
gtcttcagccgcgacgacgacgacgatctcgcacccggtgtcaacgagctggtccgcgtc
tacgtggcccagaagcgcaagatccaggacggcgacaagctggccggccgccacggcaac
aagggcgtcatcggcaagatcctccccgcggaggacatgccgttcctgcccgatggcacc
ccggtcgacatcatcctgaacacccacggtgtgccgcgtcgtatgaacatcggccagatc
ctggagacccacctcgggtgggtcgccaaggccggttggaacatcaacgtggccagcggt
gtgccggactgggcgtcgaagctgcccgaggacatgtactcggcagagcccaacaccaac
accgcgaccccggtgttcgacggtgcccgcgaggaggagctgaccggactgctgtcctcg
acgctgccgaaccgcgacggcgacgtgatggtgaacggtgacggcaaggcgacgctgttc
gacggtcgttccggcgagccgttcccgtacccggtctcggtcggctacatgtacatcatc
aagctgcaccacctggtcgacgacaagatccacgcgcgttcgaccgggccgtactcgatg
atcacgcagcagccgctcggtggtaaggcgcagttcggtggtcagcgcttcggtgagatg
gagtgctgggccatgcaggcctacggcgccgcctacaccctgcaggagttgctcaccatc
aagtcggacgacgtggtcggccgcgtgaaggtgtacgaggcgatcgtcaagggcgagaac
atccccgagccgggtatcccggagtcgttcaaggttctcctcaaggaactgcagtcgctc
tgtctcaacgtcgaggtgctcagctcggatggcgcagccatcgagatgcgcgacaccgac
gacgaggatctcgagcgtgctgcggcgaatctggggatcaacctgtcgcggaacgagtcc
gcgacggtcgacgacctcgccaactga
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