Gordonia insulae: D7316_04809
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Entry
D7316_04809 CDS
T05722
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gom
Gordonia insulae
Pathway
gom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D7316_04809 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gom03021
]
D7316_04809 (rpoC)
03400 DNA repair and recombination proteins [BR:
gom03400
]
D7316_04809 (rpoC)
Enzymes [BR:
gom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D7316_04809 (rpoC)
Transcription machinery [BR:
gom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D7316_04809 (rpoC)
DNA repair and recombination proteins [BR:
gom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D7316_04809 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
MAD
SUV3_C
Motif
Other DBs
NCBI-ProteinID:
AZG48192
UniProt:
A0A3G8JUJ7
LinkDB
All DBs
Position
5187044..5191000
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNYFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHAELSTREAEIEVEKKALADQRDVDLNERQQKLEQD
LAELEAEGAKADVRRKVRDGAEREMRRMRDHAQRALDDLEEIWDRFVKLSPGELIIDEKL
YRQLDERFGEYFTGAMGAEAIKKLLESFDIDAEADSLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLKEGAAGEYT
KASNDDVERGVYSTPAEAIMAVDRGALTVQSAIKVRLTDQRPPADIEGEQFPDGWKYGQP
WEIETTLGRVLFNELLPVEYPFVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF
HWATRSGVTVSMADVLVPPAKAEILDKYEERADGLERKFQRGALTPEERRDALVEIWKQA
TEEVGQAMEAHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGILTTI
AEKQADGSLIRDAHVETSTYARTLAQDAVDENGAVIVERGHDLGDPAIEALLGAGITHVK
VRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGVAPIAEVSGRIRLEDDDRFYKITVIPDDGSEEVVYDKIS
KRQRLRVFKHDDGSERLLADGDHVEVGQQLMEGSANPHEVLRVMGPRQVQVHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERADFENANRRVVTEGGEPA
AGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPAG
TGINKYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactatttcgatgaactgaagatcggcctggccacggccgacgacatc
cacaactggtcgtacggcgaggtcaagaagccggagacgatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggacccactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgctccg
gtcacccacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcacctcggtggac
gacgagctgcgccatgcggagctgtcgacccgtgaggcggagatcgaggtcgagaagaag
gcgctcgccgatcagcgcgacgtggacctgaacgagcgtcagcagaagctcgagcaggat
ctcgccgagctggaggccgagggtgccaaggccgacgtgcgccgcaaggtgcgcgacggt
gccgagcgcgagatgcgtcgtatgcgcgatcacgcacagcgtgcgctcgacgatctcgag
gagatctgggaccgcttcgtgaagctgagcccgggcgagctgatcatcgacgagaagctc
taccgccagctcgacgagcgcttcggtgagtacttcaccggggcgatgggtgccgaggcg
atcaagaagctcctggagagcttcgacatcgacgccgaggccgactcgctgcgcgagacc
atccgcagtggcaagggccagaagaagctgcgcgcgctgaagcgactcaaggtcgtcgcg
gcgttccagcagtccggcaactcgccgctgggcatggtgctcgacgccgtgccggtgatc
ccgccggagcttcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgatctgtaccgccgtgtcatcaaccgcaacaaccgactcaagcgactgatcgacctc
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggtcgtcgtggccgtccggtcaccggaccgggcaaccgtccgctgaag
tcgctgagcgatctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgtggtctgccgaagctgatggccctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccaggcacagaacatcaagtcggccaagcgcatggtcgagcgtcagcgc
cccgcggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgttgctgaaccgt
gcaccgacgctgcaccgcctcggtatccaggccttcgagccgcagctggtggagggtaag
gccatccagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcagaggcgcaggccgaggcccgcgtgctgatgctg
tcgtcgaacaacatcctgtcgccggcctcgggtcgtccgctggccatgccgcgactggac
atggtgaccggtctgtactacctgaccaccctcaaggagggcgcggcaggcgagtacacg
aaggcgagcaacgacgacgtcgagcgcggtgtctactcgaccccggccgaggccatcatg
gccgtcgaccgtggtgcgctcaccgtgcagtccgccatcaaggtgcggctgaccgatcag
cgtccgcccgccgacatcgagggcgagcagttccccgatggttggaagtacggacagccg
tgggagatcgagaccacgctgggtcgcgtcctgttcaacgagctgctccccgtggagtac
ccgttcgtcaacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgatctggcc
gagcggtacccgatgatcgtcgtggcgcagaccgtcgacaagctcaaggacgtcggcttc
cactgggccacgcgttccggtgtgaccgtgtccatggccgacgtgctggttccgccggcc
aaggcggagatcctcgacaagtacgaggagcgggccgacggcctggagcgcaagttccag
cgtggtgccctcaccccggaggagcgtcgcgacgctctggtcgagatctggaagcaggcc
accgaagaggtcggccaggcgatggaggctcactacccggatgacaacccgatcccgatg
atcgtcaagtcgggtgcggcgggcaacatgacccagatccgctcgctggcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgaccgttgcggagtacttcatcaacacccacggtgcccgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtccgcgagaccgattgcggtaccgagcggggcatcctcacgaccatc
gccgagaagcaggccgacggctcgctgatccgcgatgcgcacgtggagacctccacctac
gcccggaccctggcccaggatgcggtcgacgagaacggtgcggtgatcgtcgagcgcgga
cacgatctcggcgatcccgcgatcgaggctctgctcggcgccggcatcacgcacgtcaag
gtgcggtcggtgctgacctgtggcacgggcaccggtgtgtgtgcgatgtgctacggccgt
tcgatggcgaccggcaagctcgtcgacatcggcgaggccgtcggtatcatcgcggcccag
tcgatcggtgagcccggtacccagctgacgatgcgtacgttccaccagggtggcgtcggt
gacgacatcaccggtggtctgccgcgagtccaggaactcttcgaggcgcgcgtgcccaag
ggtgtcgcgcccatcgccgaggtctccggccgcatccgtctcgaggacgacgaccgcttc
tacaagatcacggtcatccccgatgacggatcggaagaggtcgtctacgacaagatctcc
aagcgtcagcgtctgcgcgtgttcaagcacgacgacggcagcgagcgtctgctcgccgac
ggcgaccacgtggaggtgggccagcagctcatggagggctcggccaacccgcacgaggtg
ctgcgcgtgatgggaccccgtcaggtgcaggtgcacctggtcaacgaggtccaggaggtc
taccgcagccagggtgtgtcgatccacgacaagcacatcgagaccatcgtgcgtcagatg
ctgcgtcgcgtgacgatcatcgattcgggttcgaccgagttcctgcccggttcgctcacc
gagcgcgcggacttcgagaacgcgaaccgtcgtgtggtgaccgaaggtggcgagcccgcc
gccggacgtcccgtgctcatgggtatcaccaaggcatcgctggccaccgagtcgtggctg
tcggcggcgtcgttccaggagaccactcgcgtgctcaccgatgcggccatcaacagccgc
agcgacaagctgatcggtctcaaggagaacgtgatcatcggtaagttgatcccggccggt
accggtatcaacaagtaccgcaacatccaggttcagccgaccgaggaagcgcgtgccgcg
gcctacgcggtgccgtcctacgacgacacctactacagcccggacggcaccttcggtgcc
cctgccggcgctgcggtgccgctggacgactacgggttctccaacgattaccgctga
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