Gordonia insulae: D7316_05199
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Entry
D7316_05199 CDS
T05722
Symbol
uvrD1_3
Name
(GenBank) ATP-dependent DNA helicase UvrD1
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gom
Gordonia insulae
Pathway
gom03420
Nucleotide excision repair
gom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D7316_05199 (uvrD1_3)
03430 Mismatch repair
D7316_05199 (uvrD1_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gom03400
]
D7316_05199 (uvrD1_3)
Enzymes [BR:
gom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D7316_05199 (uvrD1_3)
DNA repair and recombination proteins [BR:
gom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7316_05199 (uvrD1_3)
MMR (mismatch excision repair)
Other MMR factors
D7316_05199 (uvrD1_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AZG48582
UniProt:
A0A3G8JVH2
LinkDB
All DBs
Position
5684103..5687471
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AA seq
1122 aa
AA seq
DB search
MISAVALAAALGLPPPTPEQVSVIEAPMEPVLVVAGAGAGKTETMASRVVWLVANGLVAP
DEVLGLTFTRKAASELGARIRRRLSMLAGSPALRHWDPDGTIAARLSGGDPEVGTYHAYA
GRLISDYGLLLPVEPNSTLLSETELWQMAFAVVANWTGELNTTKVPASVTEAVLKLYGEM
SEHLVDVADLRRAGDDLYRLVDTLPKGPRQRDTPTQALLKVRDVIDERRELIPMVEALAE
TMRAATALDFGSQMSLAARLVMQNPEVADAERESFRAVLLDEYQDTGHSQRMLLATLFGV
APAGPPGTAGAASGARPGIAVTAVGDPIQSIYGWRGASAANLPRFTDDFRQSDSSPAVRL
ELLTSWRNAVHALRLANETSEELRRRGIPVSVLRPRPDAPLGTVHLALTDTVVDERRWIA
DHVEQHYRSAEAAGEAPPTTAILVRRNEDSAPLAAELESRGIPAEVVGIGGLLHVPEIED
IVAMLRVIADPMAGTAAMRLLTGARWQLGAGDLAALWQRARELAVVDFNASNGVVATRAE
LDAALDAVLPTEIVDRAGIADAIVDPGDASRYSTEGFARIRAFGGQLESLRRRIGQPLPE
LVADVEHTIGVAVEAQIRAHRMRGAITGREHLDAFADYVTTYADRPGANLPGLLGFLDTA
ETIEKGLEPGRIEVAEQRVQILTVHAAKGLEWDVVVLPHLSQGIFPGGRADTTWLGSAKE
LPAALRGDLADGTNSEGFPPLDLRAVSDRKELEAALTEHKEAIGRRRLEEDRRLLYVALT
RAKQALLISAHHWSETGDKPRGGSLFFDELRTIIAATVADPAVDSSGMVIDVDAPEPAAD
ASNPLAEQVVSAAWPRDNLGERRTAVAAAAQLVQDAIAERDAPALFDAPAPPDDPIGDED
DEIAAWRAEVAALLAEHHMTNQAEIDVELPTHLSVSQLVELDADEAAFARRLRRPVPFQP
NPTARRGTAFHAWVERWFGATRLLDVDELPGAADATATPDADLEQLREAFLASRWAQRSP
TEVEVPFETVIGPTVIRGRIDAVFAEPDGGWLVVDWKTGSVPEPARRESLFVQLAAYRIA
WAQLAGVPLDKVRAAFHYVRSGHTLEPDDLPDRAALGALLAK
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgatctcggcggtggcgctggccgccgcgctcggactgccaccaccgacgccggagcag
gtgtcggtgatcgaggcgccgatggagcctgtgctggtcgttgcgggtgcgggtgccggc
aagaccgagaccatggcgtcgcgggtggtgtggctggtcgcgaacggtctggtcgcgccg
gacgaggtgctcggtctcaccttcacccgcaaggcggccagtgagctcggggcgcgaatc
cggcggcgtctgtcgatgctggccgggtcgcccgcgctgcgtcattgggatcccgacgga
accatcgccgcccggctcagcggcggtgaccccgaagtgggtacctatcacgcgtatgcg
ggccgcctgatctccgactacggactgctgctgccagtggaacccaattcgaccctgctg
tcggagaccgagctgtggcagatggcattcgcggtggtcgcgaactggacgggcgagctg
aacacgacgaaggtgcccgcgagcgtgaccgaggcggtcctgaagctgtacggcgagatg
tccgagcacctcgtcgatgtcgccgatctgcgacgtgcgggtgatgatctgtatcggctt
gtcgacacgttgccgaagggaccccggcagcgcgacaccccgactcaggcgctgctgaag
gtccgggacgtgatagatgaacggcgcgagctgatcccgatggtggaggcgctggcggag
acgatgcgtgccgcgacggcgctggatttcggcagtcagatgtcgctggccgcgcggctt
gtcatgcagaatccggaagtggccgacgcggagcgtgaatcgttccgtgcggtgctgctc
gacgagtatcaggacaccgggcattcacagcggatgctgctggccacgctgttcggggtc
gctcccgccggccctcccgggacggccggcgctgcgagcggtgcccggccgggcatcgcc
gtcacggcggtcggcgatccgatccagtccatctacgggtggcgcggcgcgtcggcggcc
aacctgccccggttcaccgacgacttccggcagtccgattcctcaccggctgtccggctg
gaactgttgacgagttggcgcaacgccgtgcacgccctgcggctggcgaacgagacgtcg
gaggaactgcgtcgtcgcggtatcccggtcagcgtgttgcggccgcggccggacgccccg
ctgggcacggtgcatctggccctgaccgacaccgtcgtggacgagcggaggtggatcgcc
gatcacgtcgagcagcattaccggtccgcggaggctgccggcgaggcaccgcccaccacg
gcgatcctggtgcggcgcaacgaggattcggcgccgttggctgccgagctggagagccgg
ggcatcccggccgaggtcgtcggcatcggcgggctgctgcacgtgccggagatcgaggac
atcgtcgccatgttgcgggtcatcgccgacccgatggccgggaccgcggcgatgcggttg
ttgaccggcgcccgatggcagctcggcgccggtgacctggcggcgttgtggcagcgggcc
cgcgagctcgccgtcgtcgatttcaacgcctcgaacggcgtggtcgcgacgcgtgcggaa
ctcgatgcggcgctcgacgccgtgttgccgaccgagatcgtcgaccgggccgggatcgcc
gatgccatcgtcgatcccggtgatgcgagccgctacagcacagagggtttcgcacgaatc
cgcgcgttcggcggacagctggaatcgctgcggcgccggatcggtcagccactgccggaa
ctggtcgccgacgtcgagcacacgatcggcgtggccgtcgaggcgcagatccgggcccac
cggatgcgtggcgccatcaccggccgtgagcacctcgacgcgttcgccgattacgtgacg
acctacgcggaccggccgggcgcgaatctgcccgggctgctgggctttctggacacggcg
gagaccatcgagaaagggctggaacccgggcggatcgaggttgccgagcaacgggtgcag
atcctcaccgtgcacgcggcgaagggtctcgagtgggatgtcgtcgtgttgccccatctg
agtcagggcatcttcccgggtggccgggccgacaccacctggctcggcagcgccaaggaa
ctgcccgccgcgttgcgtggcgacctcgccgacgggacgaactccgagggtttcccaccg
ctggatctgcgggcggtgtcggatcgcaaggagctcgaggcggcattgaccgagcacaag
gaggccatcgggcggcgccggctcgaggaggaccgccggttgctctatgtggcgctcacc
cgcgccaagcaggcgctgttgatctcggcgcatcactggtcggagacgggggacaagcca
cggggcggttcactgttcttcgacgaactccgcacgatcatcgccgccactgtcgccgat
cccgcggtcgattcgtccggcatggtcatcgacgtggacgcgcccgaacccgcggccgac
gcgagcaacccgttggccgaacaggtggtcagcgcggcgtggccgcgcgacaacctgggg
gagcgtcggaccgcggtcgccgccgccgcgcagctggtccaggatgcgatcgcggaacgg
gacgcgcccgccctgttcgacgccccggcgccacccgacgacccgatcggcgacgaggac
gacgagatcgccgcatggcgtgcggaagtggccgcgctcctcgccgaacaccacatgacc
aatcaggccgagatcgatgtggagctaccgacacatctgtcggtcagtcagctcgtcgaa
ctcgacgcggacgaggcggcattcgcccggcgcctgcgccggcccgttccgttccaaccc
aatccgacggcccggcggggcaccgcctttcacgcctgggtcgagcgttggttcggtgcg
acccggttgctcgatgtcgatgagctgccgggtgccgccgatgcgacggcgacgccggac
gccgatctcgagcagctgcgtgaggcgttcctggcatcgcgctgggcccagcgcagcccg
acggaggtggaggtgccgttcgagacggtgatcggcccgacggtgatccgcgggcggatc
gacgccgtgttcgccgagccggacggtggatggttggtggtggactggaagaccgggtcg
gtacccgaaccggcgcgccgtgagtcgctgttcgtccagctggccgcctatcggatcgcc
tgggcccaactcgccggcgtcccgctcgacaaggtgcgggccgcgttccactatgtgcgg
tcgggtcacaccctggaaccggacgatttgcccgaccgtgcggcactcggcgcactgctc
gcgaaatga
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