Gordonia sp. NB41Y: Q9K23_18515
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Entry
Q9K23_18515 CDS
T11308
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
gon Gordonia sp. NB41Y
Pathway
gon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gon00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Q9K23_18515
09124 Replication and repair
03420 Nucleotide excision repair
Q9K23_18515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gon03021
]
Q9K23_18515
03400 DNA repair and recombination proteins [BR:
gon03400
]
Q9K23_18515
Enzymes [BR:
gon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q9K23_18515
Transcription machinery [BR:
gon03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Q9K23_18515
DNA repair and recombination proteins [BR:
gon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Q9K23_18515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WLP89546
LinkDB
All DBs
Position
complement(4266417..4268096)
Genome browser
AA seq
559 aa
AA seq
DB search
MDRVTDGPLIVQSDKTLLLEVDHPDAASARAAIAPFAELERAPEHVHTYRVTPLALWNAR
AAGHDAEQVVDALVTFSRYAVPQPLLMDIVDTMGRFGRLQLVKNPAHGLTLVSLDRAVLE
EIMRNKKVAPMLGARLDDDTVVVHPSERGRLKQILLKVGWPAEDLAGYVDGEAHPITLEQ
DAWHLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQW
KRELIARTSLTEEEIGEYSGERKEIRPVTIATYQVMTRKSKGEYKNLDLFDSRDWGLIIY
DEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGW
IAPAECIEVRVTLTDEERLQYAVAEADEKYKLCSTAHTKVNVVRSILARHAESQTLVIGA
YIDQLEELGRELDAPVIQGSTKNKDREALFDRFRSGELQTLVVSKVANFSIDLPEASVAV
QVSGTFGSRQEEAQRLGRLLRPKADGGQAHFYSVVSRDTLDADYAAHRQRFLAEQGYAYR
ITDADDLLGPTIGEGTPQE
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggatcgagtgactgatggacccctgatcgttcaatccgacaagacgctgctgctcgag
gtggatcaccccgacgcggcgtcggcgcgggccgcgatcgcacccttcgccgaactcgaa
cgcgcacccgaacacgtgcacacctaccgggtgacgccgctggcgctgtggaacgcccgc
gcggccggccacgacgccgagcaggtggtggacgcgctggtcaccttcagccggtatgcg
gtaccgcagccgctgctgatggacatcgtcgacaccatgggccgtttcggccggttgcag
ctggtcaagaacccggcgcacggcctgaccctggtgagcctcgatcgcgcggttctcgag
gagatcatgcgcaacaagaaggtcgcgccgatgctcggggcgcgactcgacgacgacacc
gtggtcgtccatccgtccgagcggggacggctcaagcagatcctgctcaaggtcggctgg
ccggccgaggacctcgccgggtacgtcgacggcgaggcgcatccgatcaccctcgagcag
gatgcctggcatctgcgcgactaccaggagatggccgccgactcgttctgggcgggcggc
tcgggcgtcgtggtcctgccctgcggtgcgggcaagacgatggtcggtgcggccgcgatg
gccaaggcgcaggccaccaccctgatcctggtcaccaacaccgtcgccgggcggcagtgg
aagcgtgagctgatcgcccgtacctcgctcaccgaggaggagatcggcgagtactccggc
gagcgcaaggagatccgtccggtcaccatcgccacctatcaggtgatgacccgtaagtcc
aagggcgagtacaagaacctcgatctgttcgactcccgcgactggggtctgatcatctac
gacgaggtgcacctgctgcccgcaccggtgttccggatgaccgccgacctgcagtcgcgg
cgccggctcggactcaccgccaccctggtgcgcgaggacggccgcgagggcgacgtgttc
agcctgatcggccccaagcgctacgacgccccgtggaaggacatcgaggcgcagggctgg
atcgcacccgccgagtgcatcgaggtgcgggtgacgctgaccgacgaggaacgcctgcag
tatgcggtcgccgaggccgacgagaagtacaagctgtgctccaccgcccacaccaaggtc
aacgtggtgcgctcgatcctggcccgccatgccgagtcgcagaccctggtgatcggggcc
tacatcgaccagctcgaagaactcggccgcgaactcgacgccccggtgatccaggggtcg
accaagaacaaggaccgcgaggccctgttcgaccggttccggtccggtgaactccagact
ctggtggtgtcgaaggtggcgaacttctccatcgacctgcccgaggcatcggtcgcggtg
caggtgtcgggcaccttcgggtcccggcaggaggaggcccagcggctgggccggctgttg
cgcccgaaggccgacggcgggcaggcccacttctactcggtggtctcgcgggacaccctc
gacgccgactacgccgcgcaccgtcagcggttcctcgccgagcagggctacgcctaccgg
atcaccgacgccgacgatctgctcggcccgaccatcggcgagggcaccccgcaggagtga
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