Gordonia sp. X0973: HUN08_06525
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Entry
HUN08_06525 CDS
T10819
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
goo Gordonia sp. X0973
Pathway
goo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUN08_06525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goo03019
]
HUN08_06525
03009 Ribosome biogenesis [BR:
goo03009
]
HUN08_06525
Enzymes [BR:
goo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUN08_06525
Messenger RNA biogenesis [BR:
goo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUN08_06525
Ribosome biogenesis [BR:
goo03009
]
Prokaryotic type
rRNA helicases
HUN08_06525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
UvrA_inter
CMS1
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QKT06882
UniProt:
A0AA45JJ64
LinkDB
All DBs
Position
1324476..1326218
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AA seq
580 aa
AA seq
DB search
MTDNHAESFDDLGLDDRVRRALDDVGYETPSPIQAATIPPLMSGRDVVGLAQTGTGKTAA
FAVPILSRIDTSARKPQALVLAPTRELALQVAEAFGRYAVHIPELKVLPIYGGQSYGVQL
SGLRRGAQVIVGTPGRVIDHLDKGTLDISELEFLVLDEADEMLTMGFAEDVERILADTPD
SKQVALFSATMPKAIGRLAQKYLDDPVEITVKAKTSTAQNITQKFLQVSHQRKLDALTRV
LEVEQFDGMIVFVRTKSGTEELAEKLRARGHSAMAINGDMVQAQRERTINQLKDGSLDIL
VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRA
IEKATRQSLTEIDLPSAEDVNAQRVARFADSITENLASDNLDLFRGLVENYAREHDVAMA
DIAAALALETRDGGFLMSPDPPPGERRERDRESRERGPRKGGGSFATYRIAVGRKHKVTP
GAIVGAIANEGGLTRGDFGNISIRDDFTLVELPASLDAETVAALRHTKIGRNPIDLRPDM
GPPRARGGRGGHEKRGYDKRGQRDGNRRGNPKVAGRRGRG
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgactgataaccacgccgaatccttcgacgatctgggtctcgacgaccgcgtccgccgc
gccctcgacgatgtcggctacgaaacgccgtcgcccatccaggcggcgaccatcccgccg
ctgatgtccgggcgcgacgtcgtcggactcgcgcagaccggaaccggtaagaccgcggcc
ttcgcggtgccgatcctctcgcgcatcgatacgtcggcgcgcaagccgcaggcgctggtg
ctggcgccgacccgcgagctggccctgcaggtcgccgaggccttcggccgctacgcggta
cacatcccggaactcaaggtgctgcccatctacggcggccagagctacggcgtgcagctc
tcggggttgcgccgcggcgcccaggtcatcgtcggcacgccgggccgcgtcatcgaccac
ctcgacaagggcaccctcgatatctccgaactcgagttcttggtcctggacgaggccgac
gagatgctgaccatgggattcgccgaggacgtcgagcggatcctcgccgacaccccggac
tccaagcaggtcgcgctcttctccgcgaccatgcccaaggcgatcgggcggctggcgcag
aagtacctcgacgatccggtggagatcacggtcaaggccaagacctcgaccgcgcagaac
atcacccagaagttcctgcaggtctcccaccagcgcaaactcgacgcgctgacccgtgtc
ctggaggtcgagcagttcgacgggatgatcgtcttcgtccgcaccaagtcgggcaccgag
gaactcgccgagaagctgcgcgcgcgcggccactcggcgatggcgatcaacggcgacatg
gtgcaggcgcagcgcgagcggaccatcaaccagctcaaggacgggtcgctggacatcctg
gtggccaccgacgtcgccgcccgcgggctcgacgtcgaccgcatctcccacgtcgtcaac
tacgacatcccgcatgacaccgagtcctacgtgcaccggatcgggcgcaccgggcgcgcc
gggcggtcgggcaccgcactgctgttcgtgtccccgcgcgaacgccacctgctgcgggcg
atcgagaaggcgaccaggcagtcgctgaccgagatcgacctcccgtcggccgaggacgtc
aatgcccagcgggtggcgcggttcgccgactcgatcaccgagaacctggcgtcggacaac
ctcgacctgttccgcggcctcgtcgagaactatgcgcgcgagcacgatgtcgcgatggcc
gacatcgccgccgcgctcgccctggagacccgcgacggcggcttcctgatgtcccccgat
ccgcctccgggggagcggcgggagcgcgatcgcgagtcgcgggaacgcgggccgcgcaag
ggcggcgggtcgttcgcgacctatcgcatcgccgtcgggcgcaagcacaaggtgaccccg
ggcgcgatcgtgggcgccatcgccaacgagggcggtctgacccgcggcgacttcggcaat
atcagcatccgagacgacttcacgctggtcgagctgccggcgagcctcgacgccgagacc
gtcgcggcgttgcggcacaccaagatcgggcgcaacccgatcgacctgcggcccgacatg
ggaccgccgcgtgcacgcggcggccgcggcggacacgagaagcgcggctacgacaagcgc
ggtcagcgcgacgggaaccggcggggcaaccccaaggtggccggtcggcgcgggcgcggc
tag
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