Gordonia sp. X0973: HUN08_10065
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Entry
HUN08_10065 CDS
T10819
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
goo Gordonia sp. X0973
Pathway
goo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUN08_10065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goo03019
]
HUN08_10065
Messenger RNA biogenesis [BR:
goo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUN08_10065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
AP3D1
Motif
Other DBs
NCBI-ProteinID:
QKT07499
LinkDB
All DBs
Position
complement(2060208..2062211)
Genome browser
AA seq
667 aa
AA seq
DB search
MSEQQQSSGQARRRRRAASRQAGPPASPQEVQEAQEAVTPPVDVPVEVAVVEESHVEPAQ
TSGQSSVQPDQPARSGQSSQSDQRQKKNKNKRKKKSGGGGSAPVALPVDRLGLPPKLPKG
GLRVVALGGIGEIGRNMTVFEYDGKLLIVDCGVLFPEDAQPGVDLILPDFHYIEDRMDDV
EAIVLTHGHEDHIGAIPFLLRLRGDIPVVGSRFTLALVEAKCREHRQRPKLVEVVEGQRT
QHGPFDCEYFAVNHSIPDAIAVAIRTPAGLALHTGDIKLDQLPLDGRLTDLAGFSRLGDD
GVDLFLVDSTNAEVPGFVTPEREIGGVLDQVIGQARQRVIVASFASHVHRIQQIVDVAHR
HGRCVAFVGRSMVRNMQIAQDLGYLTVPDGVVVDLDRAASLPDDRLVLISTGSQGEPLSA
LSRMARGEHRQINIRANDLVVLASSLIPGNENSVFAVVNGLVRRGAKVITQQSAKVHVSG
HASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAEATGVDPERIVLAEDGVVVDMVDG
LASIVGRVPVGHVYVDGLSVGDVGESTLSERLVLGEGGFIAITVAVDATTGKPVSAPEVS
GRGFSDDPDALKEAAEVVNNALDVLSSEGVTDAHAAAQTIRRAVGRWVAEKYRRRPMIVP
TVIEVNQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacagcagcagagcagcggccaagcgcgccgccgccggcgggccgccagtcgt
caggccgggccgcccgcgtcgccgcaggaggtacaggaagcacaggaagccgtgacgcct
cccgtcgatgtgccggtggaggtcgccgtggtcgaggaatcccacgtcgaacccgcgcag
acctccggccagtcgtcggtgcagccggatcagccggcgcggtccggccagtcgtcgcag
tcggatcagcggcagaagaagaacaagaacaagcgcaagaagaagtccggcgggggcggc
tcggcgccggtcgcgctgcccgtcgatcggctcggcctcccgccgaagctgcccaagggc
ggcctgcgcgtcgtcgcattgggcgggatcggcgagatcggccgcaacatgacggtcttc
gagtacgacggcaagctgctcatcgtcgactgcggtgtgctgttccccgaggacgcccag
cccggcgtcgacctgatcctcccggacttccactacatcgaagaccgtatggacgacgtc
gaggccatcgtgctgacccacggccacgaggaccacatcggcgccatcccgttcctgttg
cggctgcgcggcgacatcccggtcgtcgggtcgcggttcaccctcgcgctggtcgaggcg
aagtgtcgcgaacaccggcagcggcccaaactggtcgaggtcgtcgagggacagcgcact
cagcacggcccgttcgactgcgaatacttcgcggtcaaccactcgatcccggacgccatc
gccgtcgccatccgcaccccggccgggctggcgctgcacaccggcgacatcaagctcgac
cagctgccgctcgacgggcggctcaccgacctcgccgggttcagccgtctcggcgacgac
ggcgtcgacctcttcctcgtcgactcgaccaacgccgaggtccccggcttcgtcaccccc
gagcgcgagatcggcggcgtgctcgaccaggtcatcgggcaggcgcgccaacgcgtcatc
gtggcgtccttcgcgagccatgtgcaccgcatccagcagatcgtcgacgtcgcgcaccgg
cacggccgctgcgtcgccttcgtcgggcgctcgatggtccgcaacatgcagatcgcgcag
gatctcggctacctcacggtgcccgacggcgtcgtcgtcgacctcgaccgcgcggcctcg
ttgcccgacgaccggctggtcctcatctccaccggatcgcagggcgagccgctgtccgcg
ctgtcgcggatggcgcgcggcgagcaccgccagatcaacatccgcgccaacgacctcgtc
gtgctggcgtcctcgctgatcccgggcaacgagaactcggtgttcgcggtggtcaacggc
ctggtgcgccgcggtgcgaaggtcatcacgcagcagagcgcgaaggtccacgtctccggc
cacgcatcggccggcgagctgctctacctgtacaacgcggtgcgccccaccaacgccatg
cccgtgcacggggagtggcggcacctgcgcgcgaatgcggctcttgccgaggcgaccggg
gtcgacccggagcgcatcgtgctcgcggaggacggcgtggtggtcgacatggtcgacggg
ctggcgagcatcgtcggccgcgttccggtcggacacgtttacgtcgacggcctgtcggtc
ggcgacgtgggggagtcgacgctgtccgaacgcctcgtgctgggggagggcgggttcatc
gccatcaccgtcgccgtcgacgcgacgaccggcaagcccgtgtcggcgccggaggtctcc
ggtcgcggcttctccgacgacccggatgcgctcaaggaagccgccgaggtcgtcaacaac
gcgcttgacgtgctgtcgtcggagggcgttaccgacgcgcacgcggcggcccagacgatt
cgacgagcagtcggccgctgggtcgccgagaagtaccgtcgtcgcccgatgatcgtgccg
acggtcatcgaagtgaatcagtag
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