KEGG   Gordonia sp. X0973: HUN08_17715
Entry
HUN08_17715       CDS       T10819                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
goo  Gordonia sp. X0973
Pathway
goo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:goo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HUN08_17715
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:goo03400]
    HUN08_17715
Enzymes [BR:goo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HUN08_17715
DNA repair and recombination proteins [BR:goo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HUN08_17715
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QKT08840
UniProt: A0AA45GBW8
LinkDB
Position
3621099..3623579
AA seq 826 aa
MSSGGVLEVDGHSISVTNLDKVLYPATGTRKFDVIDYYTRIADFMLPHLSDRIVTRKRWP
SGVDAAPFFEKNMPAGAPEWLSRHTVGHSKRAIVYPVVTGRADLVWLAQMAALELHVPQW
RTSDDLANRIVFDLDPGPRVPLHQCAQVALLIRDVLADAGLRCWPVTSGGKGIHVYARID
PPVSPNSARTVAHELADGLAAAHPDFITATMTKSVRDERVFLDWSQNSASKTTLAPYSLR
GRERPWAAAPRSWSELADPDLRQLTFDEVLERAEADGDLLAGLDPGWSRSRYDRSSVAVT
RSGGGSEPQGEEPYRDRRKARNRIETSEADDPTATTVVNLGEYRRKRRPGKTPEPGVTDD
EAATPVDEPEPEPEPDESESETPREGPIFVIQEHHARRLHYDFRLEHDGVLVSWAVPKNL
PDDPTQNRLAIQTEDHPLEYADFAGDIPKGEYGGGHVEIWDTGTFTVEKWRADEIIVVLR
GSRVQGRYVLIRTGKGDDDKNWLVHLMADEPRPLLPDSLRDPRPMLATDENIEQLDDSWA
FEGKWDGYRLIVRYADGKLRLTSRSGIDMTEDFPELGAMAADLGLLDVVLDGEVVALDPS
GRTNFTLLSSRRNATEPYRLKLFLFDILALGGKSLLSTPWESRRQLLEELGPLFRGSPYV
EIPPLLPGPGSAAVAASREHGYEGVVAKRRTSTYQQGRRSKTWLKHKNWSDIEVVVGGWR
PGRGSRENTIGSLLVGLPEATGLRYVGRVGTGFTEAALKSLVAELKPLTISRSPFLDALD
SPVASSATWVLPKIVGEVQFLDWTSSGHLRHPSWRGIRRDKLPGDL
NT seq 2481 nt   +upstreamnt  +downstreamnt
gtgagcagcggcggggtcctcgaggtcgacggccattcgatcagcgtcacgaacctcgac
aaagtcctctatccggcgacgggcacccgcaagttcgacgtgatcgactactacacgcgg
atcgccgatttcatgctcccgcacctgtccgaccgcatcgtcacgcgcaagcgctggccg
tcgggcgtcgatgccgcgcccttcttcgagaagaacatgccggccggggccccggagtgg
ctgtcccggcacaccgtcggccacagcaagcgggccatcgtctatccggtcgtcaccggc
cgcgccgacctcgtgtggctggcacagatggccgcgctcgaactccacgtgccgcagtgg
cgcacgtcggacgacctcgcgaaccgcatcgtcttcgacctcgaccccggcccgcgggtg
ccgttgcaccagtgcgcgcaggtggcgctgctcatccgcgatgtcctcgccgacgccggg
ctgcgctgctggccggtcaccagcggcggcaaggggatccacgtctatgcgcgcatcgac
ccgcctgtgtcgccgaactccgcgcgcacggtcgcgcacgaattggccgacggtctcgcc
gccgcgcacccggatttcatcacggcgacgatgaccaagtccgtgcgcgacgagcgggtc
ttcctcgactggagccagaacagcgcctcgaagaccacgctggccccgtactcgctgcgc
ggtcgcgaacgtccgtgggccgcggccccgcgctcctggtccgagctcgccgatcccgac
ctgcgccaattgaccttcgacgaggtcctcgagcgcgccgaggccgacggcgacctcctc
gccggcctcgatccggggtggtcgagatctcgatacgaccgctcctccgtcgcggtcact
cgatccggcggtggatccgagccgcaaggcgaggaaccgtatcgagaccgccgcaaggcg
aggaaccgtatcgagacctcggaagccgacgatcccaccgcgaccaccgtcgtcaatctc
ggcgagtaccgccgaaagcgccgacccggcaagaccccagaaccaggcgtcaccgacgac
gaagcagccacccctgtcgacgaacccgaacccgaacccgaacccgacgaatccgaatcc
gagaccccgcgcgagggcccgatcttcgtgatccaagagcaccacgcccggcgcctgcac
tacgacttccggctggagcacgacggggtgctggtgagttgggcggtgcccaagaacctg
cccgacgatccgacgcagaaccggctcgccatccagaccgaggatcacccgctggagtac
gcggatttcgccggcgacatcccgaagggcgagtacggcggcgggcacgtcgagatctgg
gacaccgggacgttcaccgtcgagaagtggcgggccgacgagatcatcgtcgtactccgc
ggcagccgggtgcagggccgctatgtgctgatccgcaccggcaagggggacgacgacaag
aactggctggtccacctgatggccgacgagccgcgcccgctgctccccgattccctgcgc
gatccgcgcccgatgctggccaccgacgagaacatcgagcagctcgacgacagctgggcc
ttcgagggcaaatgggacgggtaccgcctcatcgtccgctacgccgacgggaagctgcgc
ctcacgtcgcgctcgggaatcgacatgaccgaggatttccccgagctcggcgccatggca
gccgatctcgggctgctcgacgtcgtgctcgacggggaggtcgtcgccctcgacccgtcg
gggcggaccaacttcaccctgctgagttcgcggcgcaacgccaccgagccgtaccggctc
aaactgttcctgttcgacatcctcgcgctcggcggaaagtcgctgctctcgacgccgtgg
gagtcgcgccgccagctgctcgaagaactcggcccgctgttccggggctcgccctacgtc
gagatcccgccgctgctgcccggccccggttccgccgcggtcgccgccagccgcgaacac
ggctacgagggcgtggtggccaagcgccgcacgtcgacctatcaacagggtcggcggagc
aagacgtggctcaagcacaagaactggtccgacatcgaggtggtcgtcggcgggtggcgc
cccggtcgcggctcgcgggagaacaccatcggctcccttctcgtcggactcccggaggcc
acgggactgcgatacgtcggccgggtgggcaccggattcaccgaagcagcgctgaaatcc
cttgtggcagaactgaaaccgttgacgatcagccgcagccccttcctcgacgccctcgac
tcgccggtcgcctccagtgccacctgggtgttgccgaaaatcgtgggcgaagtgcagttc
ctagactggacgtcgagtggccacctccgccatcccagttggcggggcatccggcgcgac
aagctgcccggcgacctgtag

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