Gordonia sp. PS3: ACE11G_10035
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Entry
ACE11G_10035 CDS
T10835
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gop Gordonia sp. PS3
Brite
Enzymes [BR:
gop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACE11G_10035 (hrpA)
Messenger RNA biogenesis [BR:
gop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACE11G_10035 (hrpA)
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GFIT
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NCBI-ProteinID:
XGY33072
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Position
2170379..2174083
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AA seq
1234 aa
AA seq
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MPSAIPSPDLSALTISYPPELPVSACRDEIAEAVSAHQVVVIAGETGSGKTTQLPKICLE
LGRTSIGHTQPRRIAATSVARRIADELGTEIGGTVGYQVRFSDKVGKDTRIKVMTDGILL
REIGRDPRLSGYDTIIIDEAHERSLNIDFLLGYLKQLLPTRPDLKLIITSATIEPDRFAR
HFATTADTVPILEVSGRTYPVEIRYRPRESDDSDHDDLDQIAAIDAAVGELWSHAPGDIL
VFLPTERDIRDTADALRRRSAAEIVPLFARLSVGEQQRVFAPSNGRRIVLATNVAETSLT
VPGIRYVIDAGTARISRYSTRTKVTRLPVERVSQASARQRAGRCGRVAPGICIRLYSEDD
FDARPEYTDPEILRSNLAAVILSMLSLRLGDINDFPFVQAPDPRAVRDGMAQLSELGAVT
GTDSASARLTKIGKQLARLPVDPRLGRMLVAGHDNGCLDHLLVITAALALPDVREFPSDK
REAATAAHRRHAVPGSEFLGHLKLWEYLTARRAELSSSQFRKMCEREFLHFLRIREWIDL
HRQLRRTVSDLKWQIPDTEVDPAAVHRSVLSGLLTNIGARQGDSRDYLGTRGTKFAIFPG
SFLANKPPAFVVAAELVETSRLFAHTVASIDPAWVEELAGDLVTRTYSEPHWSTRRGAVM
AYEKVSLYGVPLVAQRRVNYGSIDPKTSREIFIQEALVAGRWRNRHAFFAHNAELLRDAS
ETEHRARRRDLRISDDELFEFYAARIPSTVVSTRHFDSWWKKAGRTDPALLNLRPEDLLG
DDVPTAADYPAAWQQGETRLELRYHFEPGAPNDGVTAIIPEPLLAHVRDTGFDWLVPGMR
AELATQLIKSLPKGLRKSMSPASRYAELALSRLSVRSEPLLTGLARELSSISGVTLAPRD
FNPSALPPHLRMHFAVTGTDGAIIARGDRLAALRTDLSADADRDRRAPLHREWTADGLGT
LADSETATVAGQTITRYPTLATVPGQGVRIAKAATSTERDAGIAAAAGELLRLAIAPPSR
KLASTLPPPAKLALSQSPYPDVDALLADCTARAVTDTLAREPELAALRSPGDFGALSARL
GPVIRSRAPEYFDAAVAALAEYSPVRRAVDARSGTLAADDVSDQVNDLIFDGFVGATALE
HLRSLPRYLTAARLRLESLNTAAGRDNEAMGAIDRVVAVWNRRLAQLPAARHEALNELVQ
WRLEELRVSLFAQQLGTNGPVSEQRIIKAIDKFS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgcgatcccgtctccggacctgtccgccctgacgatctcctatccgccggaa
ctcccggtcagcgcctgccgcgacgagatcgccgaggccgtctccgcacaccaggtggtc
gtgatcgcgggcgagaccggttcgggcaagacgacccagttgccgaagatctgcctcgaa
ctcggccgcacctcgatcggtcatacgcagcctcggcggatcgcggcgacgtcggtggcc
cggcggatcgccgacgagttgggcaccgagatcggcgggaccgtcgggtatcaggtgcgc
ttctccgacaaggtcggcaaggacacccgcatcaaggtgatgaccgacggcatcctgctg
cgcgagatcggccgggatccgcggctgtccggttacgacacgatcatcatcgacgaggcg
cacgagcgcagcctcaacatcgacttcctgctcggctatctcaagcagttgctgccgacc
agaccggatctcaagctcatcatcacctcggcgaccatcgagcccgaccgcttcgcccgg
catttcgccaccaccgcggacacggtgccgatcttggaggtctcggggcggacgtacccg
gtcgagattcggtatcggccgcgcgagagcgacgactccgaccacgacgacctcgatcag
atcgcggcgatcgacgcggcggtcggcgagctgtggtcgcacgccccgggcgacatcctg
gtgttcctgccgaccgagcgcgacatccgggacacggccgatgccctccgccgacgcagc
gcggccgagatcgttccgctgttcgcccggctgtcggtcggtgagcagcaacgggtgttc
gccccgtccaacggtcggcggatcgtgctggccacgaatgtcgccgagacgtcattgacc
gttcccggcatccggtacgtgatcgatgcgggtacggctcgcatctcccgctattcgacc
cgcaccaaggtgactcgtcttcccgtggaacgggtctcacaggccagcgcccgtcagcgc
gcgggtcgctgcggccgggtggcgccgggcatctgcatccgcctgtactcggaagacgat
ttcgacgctcgtccggagtacaccgacccggagatcctgcggagcaatctcgccgccgtc
atcctgtcgatgctgtcgctgcggctgggcgacatcaacgacttcccgttcgtgcaggcg
cccgacccgcgagcggtccgcgacggcatggcacagctgtccgaactgggagcggtcacc
ggcaccgattccgcgtccgcgcggctgaccaagatcggcaagcagctcgcgcggctgccc
gtcgacccgaggttgggccggatgctggttgccggacacgacaacggctgcctcgatcac
ctgctcgtcatcactgcggcgctggccctgcccgacgttcgggagttccccagcgacaag
cgggaggccgccaccgccgcccatcgccggcacgcggtgccggggtcggagttcctcggg
cacctcaagctctgggagtatctgacggccaggcgcgcggaactctcaagcagccagttc
cgcaagatgtgcgagcgagagttcctgcacttcctgcggatccgcgaatggatcgatctg
caccggcagctgcggcgcaccgtcagcgacctcaagtggcagatcccggacaccgaggtg
gacccggcagccgttcatcgcagcgtgctctccggcctgctgaccaacatcggtgcgcgg
caaggcgactcacgcgactatctgggcacccgaggcacgaagttcgcgatcttccccgga
tccttcctcgcgaacaaaccgcccgccttcgtcgtggccgccgaactcgtcgagacctcg
cgcctgttcgcacacaccgtggcctcgatcgatccggcctgggtcgaggagttggccggc
gacctggtgacgcgcacctactccgagccgcactggtccacccgccgcggcgcggtgatg
gcgtacgagaaggtcagcctgtacggagttcccctggtggcacagcgccgcgtgaactac
gggtcgatcgacccgaagacctcgcgcgagatcttcatccaggaggcactggtcgccgga
cgctggcgtaaccgtcatgcgttcttcgcccacaacgccgagttgctccgcgacgcgtcc
gagaccgaacatcgcgcgcggcgtagggacctgcgcatctccgacgacgagctcttcgag
ttctacgcggcgcgcataccgtccaccgtggtgtcgacacggcatttcgactcgtggtgg
aagaaggcgggccgcaccgatccggcgctgctcaacctccggcccgaggacttactcgga
gacgacgtccccacggccgccgactatccggccgcctggcagcagggcgagacccgcctg
gagctccgctaccacttcgagcccggcgcacccaatgacggcgtgaccgcgatcatcccc
gagccgctcctggcacatgtgcgagacaccggattcgactggctcgtacccgggatgcgc
gccgaactcgcgacgcagctgatcaagtcgttgcccaagggcctgcgcaagtccatgtcc
ccggcgtcccggtacgccgaactcgctctcagccgactctcggtgcgcagcgagccactg
ctcaccggcctggctcgcgagctgtcgtcgatcagcggggtcaccctggctccgcgcgat
ttcaatccgtcggcactccccccgcatctgcggatgcacttcgcagtcaccggcacagac
ggcgcgatcatcgcgcgcggcgaccggctcgccgcgcttcgcaccgacctgtctgccgac
gccgaccgcgaccgccgtgcgcccctgcaccgcgaatggaccgccgacggtctgggcacc
ctcgccgactccgagacggcgaccgttgcgggacagacgatcacccgctatcccacgctc
gcgaccgtgccgggacagggcgtacgcatcgcgaaggccgccacctccaccgagcgcgac
gccggcatcgccgccgccgccggagaactcctgcgactcgcgatcgcgccgcccagccgc
aagctggcgtcgactctgccgccgccggccaagctcgcgctgagccagagcccgtatccg
gacgtggacgcgttgctggccgactgcacggcacgggcggtcaccgacaccctggcacgg
gagccggagttggccgccctgcgcagtcccggtgacttcggcgcgctctcggcgcggctg
gggccggtgatccggtcgcgcgcacccgagtacttcgacgccgccgtcgcggcgctcgcc
gaatactccccggtgcgccgggccgtcgacgcccggtccgggactctcgccgccgacgac
gtctccgatcaggtcaacgatctgatcttcgacggcttcgtcggcgcgacggcattggag
catctgcgctcgctgccgcgctatctgaccgccgcgcggctgcgcctcgagtccctcaac
accgccgccggccgggacaacgaggcgatgggcgccatcgacagggtggtggcggtctgg
aatcggcgcctcgcccagcttccggccgcacgccacgaggcgctgaacgagttggtgcag
tggcgcctggaggaactccgcgtgagcctgttcgctcagcagctcggcaccaacggtcca
gtctccgagcagcggataatcaaggcgatcgacaagttcagctga
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